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Class: CryoEMInstrument

Cryo-EM microscope specifications

URI: biostride_schema:CryoEMInstrument

classDiagram class CryoEMInstrument click CryoEMInstrument href "../CryoEMInstrument/" Instrument <|-- CryoEMInstrument click Instrument href "../Instrument/" CryoEMInstrument : accelerating_voltage CryoEMInstrument : autoloader_capacity CryoEMInstrument : cs_corrector CryoEMInstrument : current_status CryoEMInstrument --> "0..1" InstrumentStatusEnum : current_status click InstrumentStatusEnum href "../InstrumentStatusEnum/" CryoEMInstrument : description CryoEMInstrument : detector_dimensions CryoEMInstrument : detector_type CryoEMInstrument --> "0..1" DetectorTypeEnum : detector_type click DetectorTypeEnum href "../DetectorTypeEnum/" CryoEMInstrument : id CryoEMInstrument : installation_date CryoEMInstrument : instrument_code CryoEMInstrument : manufacturer CryoEMInstrument : model CryoEMInstrument : phase_plate CryoEMInstrument : pixel_size_max CryoEMInstrument : pixel_size_min CryoEMInstrument : title

Inheritance

Slots

Name Cardinality and Range Description Inheritance
accelerating_voltage 0..1
Integer		 Accelerating voltage in kV direct
cs_corrector 0..1
Boolean		 Spherical aberration corrector present direct
phase_plate 0..1
Boolean		 Phase plate available direct
detector_type 0..1
DetectorTypeEnum		 Type of detector direct
detector_dimensions 0..1
String		 Detector dimensions in pixels (e direct
pixel_size_min 0..1
Float		 Minimum pixel size in Angstroms per pixel direct
pixel_size_max 0..1
Float		 Maximum pixel size in Angstroms per pixel direct
autoloader_capacity 0..1
Integer		 Number of grids the autoloader can hold direct
instrument_code 1
String		 Unique identifier code for the instrument Instrument
manufacturer 0..1
String		 Instrument manufacturer Instrument
model 0..1
String		 Instrument model Instrument
installation_date 0..1
String		 Date of instrument installation Instrument
current_status 0..1
InstrumentStatusEnum		 Current operational status Instrument
id 1
Uriorcurie		 NamedThing
title 0..1
String		 NamedThing
description 0..1
String		 NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biostride/

Mappings

Mapping Type Mapped Value
self biostride_schema:CryoEMInstrument
native biostride_schema:CryoEMInstrument

LinkML Source

Direct

name: CryoEMInstrument
description: Cryo-EM microscope specifications
from_schema: https://w3id.org/biostride/
is_a: Instrument
attributes:
  accelerating_voltage:
    name: accelerating_voltage
    description: Accelerating voltage in kV
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMInstrument
    range: integer
    any_of:
    - equals_number: 120
    - equals_number: 200
    - equals_number: 300
  cs_corrector:
    name: cs_corrector
    description: Spherical aberration corrector present
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMInstrument
    range: boolean
  phase_plate:
    name: phase_plate
    description: Phase plate available
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMInstrument
    range: boolean
  detector_type:
    name: detector_type
    description: Type of detector
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMInstrument
    - XRFImage
    range: DetectorTypeEnum
  detector_dimensions:
    name: detector_dimensions
    description: Detector dimensions in pixels (e.g., 4096x4096)
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMInstrument
  pixel_size_min:
    name: pixel_size_min
    description: Minimum pixel size in Angstroms per pixel
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMInstrument
    range: float
  pixel_size_max:
    name: pixel_size_max
    description: Maximum pixel size in Angstroms per pixel
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMInstrument
    range: float
  autoloader_capacity:
    name: autoloader_capacity
    description: Number of grids the autoloader can hold
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMInstrument
    range: integer

Induced

name: CryoEMInstrument
description: Cryo-EM microscope specifications
from_schema: https://w3id.org/biostride/
is_a: Instrument
attributes:
  accelerating_voltage:
    name: accelerating_voltage
    description: Accelerating voltage in kV
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: accelerating_voltage
    owner: CryoEMInstrument
    domain_of:
    - CryoEMInstrument
    range: integer
    any_of:
    - equals_number: 120
    - equals_number: 200
    - equals_number: 300
  cs_corrector:
    name: cs_corrector
    description: Spherical aberration corrector present
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: cs_corrector
    owner: CryoEMInstrument
    domain_of:
    - CryoEMInstrument
    range: boolean
  phase_plate:
    name: phase_plate
    description: Phase plate available
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: phase_plate
    owner: CryoEMInstrument
    domain_of:
    - CryoEMInstrument
    range: boolean
  detector_type:
    name: detector_type
    description: Type of detector
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: detector_type
    owner: CryoEMInstrument
    domain_of:
    - CryoEMInstrument
    - XRFImage
    range: DetectorTypeEnum
  detector_dimensions:
    name: detector_dimensions
    description: Detector dimensions in pixels (e.g., 4096x4096)
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: detector_dimensions
    owner: CryoEMInstrument
    domain_of:
    - CryoEMInstrument
    range: string
  pixel_size_min:
    name: pixel_size_min
    description: Minimum pixel size in Angstroms per pixel
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: pixel_size_min
    owner: CryoEMInstrument
    domain_of:
    - CryoEMInstrument
    range: float
  pixel_size_max:
    name: pixel_size_max
    description: Maximum pixel size in Angstroms per pixel
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: pixel_size_max
    owner: CryoEMInstrument
    domain_of:
    - CryoEMInstrument
    range: float
  autoloader_capacity:
    name: autoloader_capacity
    description: Number of grids the autoloader can hold
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: autoloader_capacity
    owner: CryoEMInstrument
    domain_of:
    - CryoEMInstrument
    range: integer
  instrument_code:
    name: instrument_code
    description: Unique identifier code for the instrument
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: instrument_code
    owner: CryoEMInstrument
    domain_of:
    - Instrument
    range: string
    required: true
  manufacturer:
    name: manufacturer
    description: Instrument manufacturer
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: manufacturer
    owner: CryoEMInstrument
    domain_of:
    - Instrument
    range: string
  model:
    name: model
    description: Instrument model
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: model
    owner: CryoEMInstrument
    domain_of:
    - Instrument
    range: string
  installation_date:
    name: installation_date
    description: Date of instrument installation
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: installation_date
    owner: CryoEMInstrument
    domain_of:
    - Instrument
    range: string
  current_status:
    name: current_status
    description: Current operational status
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: current_status
    owner: CryoEMInstrument
    domain_of:
    - Instrument
    range: InstrumentStatusEnum
  id:
    name: id
    from_schema: https://w3id.org/biostride/
    rank: 1000
    identifier: true
    alias: id
    owner: CryoEMInstrument
    domain_of:
    - NamedThing
    - OntologyTerm
    range: uriorcurie
    required: true
  title:
    name: title
    from_schema: https://w3id.org/biostride/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: CryoEMInstrument
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: description
    owner: CryoEMInstrument
    domain_of:
    - NamedThing
    range: string