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Class: CryoEMPreparation

Cryo-EM specific sample preparation

URI: biostride_schema:CryoEMPreparation

classDiagram class CryoEMPreparation click CryoEMPreparation href "../CryoEMPreparation/" TechniqueSpecificPreparation <|-- CryoEMPreparation click TechniqueSpecificPreparation href "../TechniqueSpecificPreparation/" CryoEMPreparation : blot_force CryoEMPreparation : blot_time CryoEMPreparation : chamber_temperature CryoEMPreparation : grid_type CryoEMPreparation --> "0..1" GridTypeEnum : grid_type click GridTypeEnum href "../GridTypeEnum/" CryoEMPreparation : hole_size CryoEMPreparation : humidity_percentage CryoEMPreparation : plasma_treatment CryoEMPreparation : support_film CryoEMPreparation : vitrification_method CryoEMPreparation --> "0..1" VitrificationMethodEnum : vitrification_method click VitrificationMethodEnum href "../VitrificationMethodEnum/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
grid_type 0..1
GridTypeEnum		 Type of EM grid used direct
support_film 0..1
String		 Support film type direct
hole_size 0..1
Float		 Hole size in micrometers direct
vitrification_method 0..1
VitrificationMethodEnum		 Method used for vitrification direct
blot_time 0..1
Float		 Blotting time in seconds direct
blot_force 0..1
Integer		 Blotting force setting direct
humidity_percentage 0..1
Float		 Chamber humidity during vitrification direct
chamber_temperature 0..1
Float		 Chamber temperature in Celsius direct
plasma_treatment 0..1
String		 Plasma treatment details direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biostride/

Mappings

Mapping Type Mapped Value
self biostride_schema:CryoEMPreparation
native biostride_schema:CryoEMPreparation

LinkML Source

Direct

name: CryoEMPreparation
description: Cryo-EM specific sample preparation
from_schema: https://w3id.org/biostride/
is_a: TechniqueSpecificPreparation
attributes:
  grid_type:
    name: grid_type
    description: Type of EM grid used
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMPreparation
    range: GridTypeEnum
  support_film:
    name: support_film
    description: Support film type
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMPreparation
    range: string
  hole_size:
    name: hole_size
    description: Hole size in micrometers
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMPreparation
    range: float
    minimum_value: 0.5
    maximum_value: 5.0
  vitrification_method:
    name: vitrification_method
    description: Method used for vitrification
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMPreparation
    range: VitrificationMethodEnum
  blot_time:
    name: blot_time
    description: Blotting time in seconds
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMPreparation
    range: float
    minimum_value: 0.5
    maximum_value: 10.0
  blot_force:
    name: blot_force
    description: Blotting force setting
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMPreparation
    range: integer
  humidity_percentage:
    name: humidity_percentage
    description: Chamber humidity during vitrification
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMPreparation
    range: float
    minimum_value: 0
    maximum_value: 100
  chamber_temperature:
    name: chamber_temperature
    description: Chamber temperature in Celsius
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMPreparation
    range: float
  plasma_treatment:
    name: plasma_treatment
    description: Plasma treatment details
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - CryoEMPreparation

Induced

name: CryoEMPreparation
description: Cryo-EM specific sample preparation
from_schema: https://w3id.org/biostride/
is_a: TechniqueSpecificPreparation
attributes:
  grid_type:
    name: grid_type
    description: Type of EM grid used
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: grid_type
    owner: CryoEMPreparation
    domain_of:
    - CryoEMPreparation
    range: GridTypeEnum
  support_film:
    name: support_film
    description: Support film type
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: support_film
    owner: CryoEMPreparation
    domain_of:
    - CryoEMPreparation
    range: string
  hole_size:
    name: hole_size
    description: Hole size in micrometers
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: hole_size
    owner: CryoEMPreparation
    domain_of:
    - CryoEMPreparation
    range: float
    minimum_value: 0.5
    maximum_value: 5.0
  vitrification_method:
    name: vitrification_method
    description: Method used for vitrification
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: vitrification_method
    owner: CryoEMPreparation
    domain_of:
    - CryoEMPreparation
    range: VitrificationMethodEnum
  blot_time:
    name: blot_time
    description: Blotting time in seconds
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: blot_time
    owner: CryoEMPreparation
    domain_of:
    - CryoEMPreparation
    range: float
    minimum_value: 0.5
    maximum_value: 10.0
  blot_force:
    name: blot_force
    description: Blotting force setting
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: blot_force
    owner: CryoEMPreparation
    domain_of:
    - CryoEMPreparation
    range: integer
  humidity_percentage:
    name: humidity_percentage
    description: Chamber humidity during vitrification
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: humidity_percentage
    owner: CryoEMPreparation
    domain_of:
    - CryoEMPreparation
    range: float
    minimum_value: 0
    maximum_value: 100
  chamber_temperature:
    name: chamber_temperature
    description: Chamber temperature in Celsius
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: chamber_temperature
    owner: CryoEMPreparation
    domain_of:
    - CryoEMPreparation
    range: float
  plasma_treatment:
    name: plasma_treatment
    description: Plasma treatment details
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: plasma_treatment
    owner: CryoEMPreparation
    domain_of:
    - CryoEMPreparation
    range: string