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Class: ExperimentRun

An experimental data collection session

URI: biostride_schema:ExperimentRun

classDiagram class ExperimentRun click ExperimentRun href "../ExperimentRun/" NamedThing <|-- ExperimentRun click NamedThing href "../NamedThing/" ExperimentRun : data_collection_strategy ExperimentRun --> "0..1" DataCollectionStrategy : data_collection_strategy click DataCollectionStrategy href "../DataCollectionStrategy/" ExperimentRun : description ExperimentRun : experiment_code ExperimentRun : experiment_date ExperimentRun : experimental_conditions ExperimentRun --> "0..1" ExperimentalConditions : experimental_conditions click ExperimentalConditions href "../ExperimentalConditions/" ExperimentRun : id ExperimentRun : instrument_id ExperimentRun : operator_id ExperimentRun : processing_status ExperimentRun --> "0..1" ProcessingStatusEnum : processing_status click ProcessingStatusEnum href "../ProcessingStatusEnum/" ExperimentRun : quality_metrics ExperimentRun --> "0..1" QualityMetrics : quality_metrics click QualityMetrics href "../QualityMetrics/" ExperimentRun : raw_data_location ExperimentRun : sample_id ExperimentRun : technique ExperimentRun --> "1" TechniqueEnum : technique click TechniqueEnum href "../TechniqueEnum/" ExperimentRun : title

Inheritance

Slots

Name Cardinality and Range Description Inheritance
experiment_code 1
String		 Unique experiment identifier direct
sample_id 1
String		 Reference to the sample being analyzed direct
instrument_id 1
String		 Reference to the instrument used direct
experiment_date 0..1
String		 Date of the experiment direct
operator_id 0..1
String		 Person who performed the experiment direct
technique 1
TechniqueEnum		 Technique used for data collection direct
experimental_conditions 0..1
ExperimentalConditions		 Environmental and experimental conditions direct
data_collection_strategy 0..1
DataCollectionStrategy		 Strategy for data collection direct
quality_metrics 0..1
QualityMetrics		 Quality metrics for the experiment direct
raw_data_location 0..1
String		 Location of raw data files direct
processing_status 0..1
ProcessingStatusEnum		 Current processing status direct
id 1
Uriorcurie		 NamedThing
title 0..1
String		 NamedThing
description 0..1
String		 NamedThing

Usages

used by used in type used
Study instrument_runs range ExperimentRun

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biostride/

Mappings

Mapping Type Mapped Value
self biostride_schema:ExperimentRun
native biostride_schema:ExperimentRun

LinkML Source

Direct

name: ExperimentRun
description: An experimental data collection session
from_schema: https://w3id.org/biostride/
is_a: NamedThing
attributes:
  experiment_code:
    name: experiment_code
    description: Unique experiment identifier
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - ExperimentRun
    required: true
  sample_id:
    name: sample_id
    description: Reference to the sample being analyzed
    from_schema: https://w3id.org/biostride/
    domain_of:
    - SamplePreparation
    - ExperimentRun
    range: string
    required: true
  instrument_id:
    name: instrument_id
    description: Reference to the instrument used
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - ExperimentRun
    range: string
    required: true
  experiment_date:
    name: experiment_date
    description: Date of the experiment
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - ExperimentRun
    range: string
  operator_id:
    name: operator_id
    description: Person who performed the experiment
    from_schema: https://w3id.org/biostride/
    domain_of:
    - SamplePreparation
    - ExperimentRun
    range: string
  technique:
    name: technique
    description: Technique used for data collection
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - ExperimentRun
    range: TechniqueEnum
    required: true
  experimental_conditions:
    name: experimental_conditions
    description: Environmental and experimental conditions
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - ExperimentRun
    range: ExperimentalConditions
  data_collection_strategy:
    name: data_collection_strategy
    description: Strategy for data collection
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - ExperimentRun
    range: DataCollectionStrategy
  quality_metrics:
    name: quality_metrics
    description: Quality metrics for the experiment
    from_schema: https://w3id.org/biostride/
    domain_of:
    - Sample
    - ExperimentRun
    range: QualityMetrics
  raw_data_location:
    name: raw_data_location
    description: Location of raw data files
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - ExperimentRun
  processing_status:
    name: processing_status
    description: Current processing status
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - ExperimentRun
    range: ProcessingStatusEnum

Induced

name: ExperimentRun
description: An experimental data collection session
from_schema: https://w3id.org/biostride/
is_a: NamedThing
attributes:
  experiment_code:
    name: experiment_code
    description: Unique experiment identifier
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: experiment_code
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    range: string
    required: true
  sample_id:
    name: sample_id
    description: Reference to the sample being analyzed
    from_schema: https://w3id.org/biostride/
    alias: sample_id
    owner: ExperimentRun
    domain_of:
    - SamplePreparation
    - ExperimentRun
    range: string
    required: true
  instrument_id:
    name: instrument_id
    description: Reference to the instrument used
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: instrument_id
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    range: string
    required: true
  experiment_date:
    name: experiment_date
    description: Date of the experiment
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: experiment_date
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    range: string
  operator_id:
    name: operator_id
    description: Person who performed the experiment
    from_schema: https://w3id.org/biostride/
    alias: operator_id
    owner: ExperimentRun
    domain_of:
    - SamplePreparation
    - ExperimentRun
    range: string
  technique:
    name: technique
    description: Technique used for data collection
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: technique
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    range: TechniqueEnum
    required: true
  experimental_conditions:
    name: experimental_conditions
    description: Environmental and experimental conditions
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: experimental_conditions
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    range: ExperimentalConditions
  data_collection_strategy:
    name: data_collection_strategy
    description: Strategy for data collection
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: data_collection_strategy
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    range: DataCollectionStrategy
  quality_metrics:
    name: quality_metrics
    description: Quality metrics for the experiment
    from_schema: https://w3id.org/biostride/
    alias: quality_metrics
    owner: ExperimentRun
    domain_of:
    - Sample
    - ExperimentRun
    range: QualityMetrics
  raw_data_location:
    name: raw_data_location
    description: Location of raw data files
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: raw_data_location
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    range: string
  processing_status:
    name: processing_status
    description: Current processing status
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: processing_status
    owner: ExperimentRun
    domain_of:
    - ExperimentRun
    range: ProcessingStatusEnum
  id:
    name: id
    from_schema: https://w3id.org/biostride/
    rank: 1000
    identifier: true
    alias: id
    owner: ExperimentRun
    domain_of:
    - NamedThing
    - OntologyTerm
    range: uriorcurie
    required: true
  title:
    name: title
    from_schema: https://w3id.org/biostride/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: ExperimentRun
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: description
    owner: ExperimentRun
    domain_of:
    - NamedThing
    range: string