Class: FTIRImage

Fourier Transform Infrared (FTIR) spectroscopy image capturing molecular composition through vibrational spectroscopy

classDiagram class FTIRImage click FTIRImage href "../FTIRImage/" Image <|-- FTIRImage click Image href "../Image/" FTIRImage : acquisition_date FTIRImage : apodization_function FTIRImage : background_correction FTIRImage : description FTIRImage : dimensions_x FTIRImage : dimensions_y FTIRImage : dose FTIRImage : exposure_time FTIRImage : file_name FTIRImage : id FTIRImage : molecular_signatures FTIRImage : number_of_scans FTIRImage : pixel_size FTIRImage : spectral_resolution FTIRImage : title FTIRImage : wavenumber_max FTIRImage : wavenumber_min

Inheritance

NamedThing
- Image
  - FTIRImage

Slots

Name	Cardinality and Range	Description	Inheritance
wavenumber_min	0..1 Float	Minimum wavenumber in cm⁻¹	direct
wavenumber_max	0..1 Float	Maximum wavenumber in cm⁻¹	direct
spectral_resolution	0..1 Float	Spectral resolution in cm⁻¹	direct
number_of_scans	0..1 Integer	Number of scans averaged for the spectrum	direct
apodization_function	0..1 String	Mathematical function used for apodization	direct
molecular_signatures	* String	Identified molecular signatures or peaks	direct
background_correction	0..1 String	Method used for background correction	direct
file_name	1 String	Image file name	Image
acquisition_date	0..1 String	Date image was acquired	Image
pixel_size	0..1 Float	Pixel size in Angstroms	Image
dimensions_x	0..1 Integer	Image width in pixels	Image
dimensions_y	0..1 Integer	Image height in pixels	Image
exposure_time	0..1 Float	Exposure time in seconds	Image
dose	0..1 Float	Electron dose in e-/Å²	Image
id	1 Uriorcurie		NamedThing
title	0..1 String		NamedThing
description	0..1 String		NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/biostride/

Mappings

Mapping Type	Mapped Value
self	biostride_schema:FTIRImage
native	biostride_schema:FTIRImage

LinkML Source

Direct

name: FTIRImage
description: Fourier Transform Infrared (FTIR) spectroscopy image capturing molecular
  composition through vibrational spectroscopy
from_schema: https://w3id.org/biostride/
is_a: Image
attributes:
  wavenumber_min:
    name: wavenumber_min
    description: Minimum wavenumber in cm⁻¹
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - FTIRImage
    range: float
  wavenumber_max:
    name: wavenumber_max
    description: Maximum wavenumber in cm⁻¹
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - FTIRImage
    range: float
  spectral_resolution:
    name: spectral_resolution
    description: Spectral resolution in cm⁻¹
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - FTIRImage
    range: float
  number_of_scans:
    name: number_of_scans
    description: Number of scans averaged for the spectrum
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - FTIRImage
    range: integer
  apodization_function:
    name: apodization_function
    description: Mathematical function used for apodization
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - FTIRImage
    range: string
  molecular_signatures:
    name: molecular_signatures
    description: Identified molecular signatures or peaks
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - FTIRImage
    range: string
    multivalued: true
  background_correction:
    name: background_correction
    description: Method used for background correction
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - FTIRImage
    range: string

Induced

name: FTIRImage
description: Fourier Transform Infrared (FTIR) spectroscopy image capturing molecular
  composition through vibrational spectroscopy
from_schema: https://w3id.org/biostride/
is_a: Image
attributes:
  wavenumber_min:
    name: wavenumber_min
    description: Minimum wavenumber in cm⁻¹
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: wavenumber_min
    owner: FTIRImage
    domain_of:
    - FTIRImage
    range: float
  wavenumber_max:
    name: wavenumber_max
    description: Maximum wavenumber in cm⁻¹
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: wavenumber_max
    owner: FTIRImage
    domain_of:
    - FTIRImage
    range: float
  spectral_resolution:
    name: spectral_resolution
    description: Spectral resolution in cm⁻¹
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: spectral_resolution
    owner: FTIRImage
    domain_of:
    - FTIRImage
    range: float
  number_of_scans:
    name: number_of_scans
    description: Number of scans averaged for the spectrum
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: number_of_scans
    owner: FTIRImage
    domain_of:
    - FTIRImage
    range: integer
  apodization_function:
    name: apodization_function
    description: Mathematical function used for apodization
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: apodization_function
    owner: FTIRImage
    domain_of:
    - FTIRImage
    range: string
  molecular_signatures:
    name: molecular_signatures
    description: Identified molecular signatures or peaks
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: molecular_signatures
    owner: FTIRImage
    domain_of:
    - FTIRImage
    range: string
    multivalued: true
  background_correction:
    name: background_correction
    description: Method used for background correction
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: background_correction
    owner: FTIRImage
    domain_of:
    - FTIRImage
    range: string
  file_name:
    name: file_name
    description: Image file name
    from_schema: https://w3id.org/biostride/
    alias: file_name
    owner: FTIRImage
    domain_of:
    - DataFile
    - Image
    range: string
    required: true
  acquisition_date:
    name: acquisition_date
    description: Date image was acquired
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: acquisition_date
    owner: FTIRImage
    domain_of:
    - Image
    range: string
  pixel_size:
    name: pixel_size
    description: Pixel size in Angstroms
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: pixel_size
    owner: FTIRImage
    domain_of:
    - Image
    range: float
  dimensions_x:
    name: dimensions_x
    description: Image width in pixels
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dimensions_x
    owner: FTIRImage
    domain_of:
    - Image
    range: integer
  dimensions_y:
    name: dimensions_y
    description: Image height in pixels
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dimensions_y
    owner: FTIRImage
    domain_of:
    - Image
    range: integer
  exposure_time:
    name: exposure_time
    description: Exposure time in seconds
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: exposure_time
    owner: FTIRImage
    domain_of:
    - Image
    - ExperimentalConditions
    range: float
  dose:
    name: dose
    description: Electron dose in e-/Å²
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dose
    owner: FTIRImage
    domain_of:
    - Image
    range: float
  id:
    name: id
    from_schema: https://w3id.org/biostride/
    rank: 1000
    identifier: true
    alias: id
    owner: FTIRImage
    domain_of:
    - NamedThing
    - OntologyTerm
    range: uriorcurie
    required: true
  title:
    name: title
    from_schema: https://w3id.org/biostride/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: FTIRImage
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: description
    owner: FTIRImage
    domain_of:
    - NamedThing
    range: string