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Class: FluorescenceImage

Fluorescence microscopy image capturing specific molecular targets through fluorescent labeling

URI: biostride_schema:FluorescenceImage

classDiagram class FluorescenceImage click FluorescenceImage href "../FluorescenceImage/" Image2D <|-- FluorescenceImage click Image2D href "../Image2D/" FluorescenceImage : acquisition_date FluorescenceImage : astigmatism FluorescenceImage : channel_name FluorescenceImage : defocus FluorescenceImage : description FluorescenceImage : dimensions_x FluorescenceImage : dimensions_y FluorescenceImage : dose FluorescenceImage : emission_filter FluorescenceImage : emission_wavelength FluorescenceImage : excitation_filter FluorescenceImage : excitation_wavelength FluorescenceImage : exposure_time FluorescenceImage : file_name FluorescenceImage : fluorophore FluorescenceImage : id FluorescenceImage : laser_power FluorescenceImage : pinhole_size FluorescenceImage : pixel_size FluorescenceImage : quantum_yield FluorescenceImage : title

Inheritance

Slots

Name Cardinality and Range Description Inheritance
excitation_wavelength 0..1
Float		 Excitation wavelength in nanometers direct
emission_wavelength 0..1
Float		 Emission wavelength in nanometers direct
excitation_filter 0..1
String		 Specifications of the excitation filter direct
emission_filter 0..1
String		 Specifications of the emission filter direct
fluorophore 0..1
String		 Name or type of fluorophore used direct
channel_name 0..1
String		 Name of the fluorescence channel (e direct
laser_power 0..1
Float		 Laser power in milliwatts or percentage direct
pinhole_size 0..1
Float		 Pinhole size in Airy units for confocal microscopy direct
quantum_yield 0..1
Float		 Quantum yield of the fluorophore direct
defocus 0..1
Float		 Defocus value in micrometers Image2D
astigmatism 0..1
Float		 Astigmatism value Image2D
file_name 1
String		 Image file name Image
acquisition_date 0..1
String		 Date image was acquired Image
pixel_size 0..1
Float		 Pixel size in Angstroms Image
dimensions_x 0..1
Integer		 Image width in pixels Image
dimensions_y 0..1
Integer		 Image height in pixels Image
exposure_time 0..1
Float		 Exposure time in seconds Image
dose 0..1
Float		 Electron dose in e-/Ų Image
id 1
Uriorcurie		 NamedThing
title 0..1
String		 NamedThing
description 0..1
String		 NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biostride/

Mappings

Mapping Type Mapped Value
self biostride_schema:FluorescenceImage
native biostride_schema:FluorescenceImage

LinkML Source

Direct

name: FluorescenceImage
description: Fluorescence microscopy image capturing specific molecular targets through
  fluorescent labeling
from_schema: https://w3id.org/biostride/
is_a: Image2D
attributes:
  excitation_wavelength:
    name: excitation_wavelength
    description: Excitation wavelength in nanometers
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: float
  emission_wavelength:
    name: emission_wavelength
    description: Emission wavelength in nanometers
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: float
  excitation_filter:
    name: excitation_filter
    description: Specifications of the excitation filter
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: string
  emission_filter:
    name: emission_filter
    description: Specifications of the emission filter
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: string
  fluorophore:
    name: fluorophore
    description: Name or type of fluorophore used
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: string
  channel_name:
    name: channel_name
    description: Name of the fluorescence channel (e.g., DAPI, GFP, RFP)
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: string
  laser_power:
    name: laser_power
    description: Laser power in milliwatts or percentage
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: float
  pinhole_size:
    name: pinhole_size
    description: Pinhole size in Airy units for confocal microscopy
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: float
  quantum_yield:
    name: quantum_yield
    description: Quantum yield of the fluorophore
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - FluorescenceImage
    range: float

Induced

name: FluorescenceImage
description: Fluorescence microscopy image capturing specific molecular targets through
  fluorescent labeling
from_schema: https://w3id.org/biostride/
is_a: Image2D
attributes:
  excitation_wavelength:
    name: excitation_wavelength
    description: Excitation wavelength in nanometers
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: excitation_wavelength
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: float
  emission_wavelength:
    name: emission_wavelength
    description: Emission wavelength in nanometers
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: emission_wavelength
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: float
  excitation_filter:
    name: excitation_filter
    description: Specifications of the excitation filter
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: excitation_filter
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: string
  emission_filter:
    name: emission_filter
    description: Specifications of the emission filter
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: emission_filter
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: string
  fluorophore:
    name: fluorophore
    description: Name or type of fluorophore used
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: fluorophore
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: string
  channel_name:
    name: channel_name
    description: Name of the fluorescence channel (e.g., DAPI, GFP, RFP)
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: channel_name
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: string
  laser_power:
    name: laser_power
    description: Laser power in milliwatts or percentage
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: laser_power
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: float
  pinhole_size:
    name: pinhole_size
    description: Pinhole size in Airy units for confocal microscopy
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: pinhole_size
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: float
  quantum_yield:
    name: quantum_yield
    description: Quantum yield of the fluorophore
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: quantum_yield
    owner: FluorescenceImage
    domain_of:
    - FluorescenceImage
    range: float
  defocus:
    name: defocus
    description: Defocus value in micrometers
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: defocus
    owner: FluorescenceImage
    domain_of:
    - Image2D
    range: float
  astigmatism:
    name: astigmatism
    description: Astigmatism value
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: astigmatism
    owner: FluorescenceImage
    domain_of:
    - Image2D
    range: float
  file_name:
    name: file_name
    description: Image file name
    from_schema: https://w3id.org/biostride/
    alias: file_name
    owner: FluorescenceImage
    domain_of:
    - DataFile
    - Image
    range: string
    required: true
  acquisition_date:
    name: acquisition_date
    description: Date image was acquired
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: acquisition_date
    owner: FluorescenceImage
    domain_of:
    - Image
    range: string
  pixel_size:
    name: pixel_size
    description: Pixel size in Angstroms
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: pixel_size
    owner: FluorescenceImage
    domain_of:
    - Image
    range: float
  dimensions_x:
    name: dimensions_x
    description: Image width in pixels
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dimensions_x
    owner: FluorescenceImage
    domain_of:
    - Image
    range: integer
  dimensions_y:
    name: dimensions_y
    description: Image height in pixels
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dimensions_y
    owner: FluorescenceImage
    domain_of:
    - Image
    range: integer
  exposure_time:
    name: exposure_time
    description: Exposure time in seconds
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: exposure_time
    owner: FluorescenceImage
    domain_of:
    - Image
    - ExperimentalConditions
    range: float
  dose:
    name: dose
    description: Electron dose in e-/Ų
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dose
    owner: FluorescenceImage
    domain_of:
    - Image
    range: float
  id:
    name: id
    from_schema: https://w3id.org/biostride/
    rank: 1000
    identifier: true
    alias: id
    owner: FluorescenceImage
    domain_of:
    - NamedThing
    - OntologyTerm
    range: uriorcurie
    required: true
  title:
    name: title
    from_schema: https://w3id.org/biostride/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: FluorescenceImage
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: description
    owner: FluorescenceImage
    domain_of:
    - NamedThing
    range: string