Class: Image2D

A 2D image (micrograph, diffraction pattern)

classDiagram class Image2D click Image2D href "../Image2D/" Image <|-- Image2D click Image href "../Image/" Image2D <|-- FluorescenceImage click FluorescenceImage href "../FluorescenceImage/" Image2D <|-- OpticalImage click OpticalImage href "../OpticalImage/" Image2D <|-- XRFImage click XRFImage href "../XRFImage/" Image2D : acquisition_date Image2D : astigmatism Image2D : defocus Image2D : description Image2D : dimensions_x Image2D : dimensions_y Image2D : dose Image2D : exposure_time Image2D : file_name Image2D : id Image2D : pixel_size Image2D : title

Inheritance

NamedThing
- Image
  - Image2D

Slots

Name	Cardinality and Range	Description	Inheritance
defocus	0..1 Float	Defocus value in micrometers	direct
astigmatism	0..1 Float	Astigmatism value	direct
file_name	1 String	Image file name	Image
acquisition_date	0..1 String	Date image was acquired	Image
pixel_size	0..1 Float	Pixel size in Angstroms	Image
dimensions_x	0..1 Integer	Image width in pixels	Image
dimensions_y	0..1 Integer	Image height in pixels	Image
exposure_time	0..1 Float	Exposure time in seconds	Image
dose	0..1 Float	Electron dose in e-/Å²	Image
id	1 Uriorcurie		NamedThing
title	0..1 String		NamedThing
description	0..1 String		NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/biostride/

Mappings

Mapping Type	Mapped Value
self	biostride_schema:Image2D
native	biostride_schema:Image2D

LinkML Source

Direct

name: Image2D
description: A 2D image (micrograph, diffraction pattern)
from_schema: https://w3id.org/biostride/
is_a: Image
attributes:
  defocus:
    name: defocus
    description: Defocus value in micrometers
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - Image2D
    range: float
  astigmatism:
    name: astigmatism
    description: Astigmatism value
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - Image2D
    range: float

Induced

name: Image2D
description: A 2D image (micrograph, diffraction pattern)
from_schema: https://w3id.org/biostride/
is_a: Image
attributes:
  defocus:
    name: defocus
    description: Defocus value in micrometers
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: defocus
    owner: Image2D
    domain_of:
    - Image2D
    range: float
  astigmatism:
    name: astigmatism
    description: Astigmatism value
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: astigmatism
    owner: Image2D
    domain_of:
    - Image2D
    range: float
  file_name:
    name: file_name
    description: Image file name
    from_schema: https://w3id.org/biostride/
    alias: file_name
    owner: Image2D
    domain_of:
    - DataFile
    - Image
    range: string
    required: true
  acquisition_date:
    name: acquisition_date
    description: Date image was acquired
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: acquisition_date
    owner: Image2D
    domain_of:
    - Image
    range: string
  pixel_size:
    name: pixel_size
    description: Pixel size in Angstroms
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: pixel_size
    owner: Image2D
    domain_of:
    - Image
    range: float
  dimensions_x:
    name: dimensions_x
    description: Image width in pixels
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dimensions_x
    owner: Image2D
    domain_of:
    - Image
    range: integer
  dimensions_y:
    name: dimensions_y
    description: Image height in pixels
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dimensions_y
    owner: Image2D
    domain_of:
    - Image
    range: integer
  exposure_time:
    name: exposure_time
    description: Exposure time in seconds
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: exposure_time
    owner: Image2D
    domain_of:
    - Image
    - ExperimentalConditions
    range: float
  dose:
    name: dose
    description: Electron dose in e-/Å²
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dose
    owner: Image2D
    domain_of:
    - Image
    range: float
  id:
    name: id
    from_schema: https://w3id.org/biostride/
    rank: 1000
    identifier: true
    alias: id
    owner: Image2D
    domain_of:
    - NamedThing
    - OntologyTerm
    range: uriorcurie
    required: true
  title:
    name: title
    from_schema: https://w3id.org/biostride/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: Image2D
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: description
    owner: Image2D
    domain_of:
    - NamedThing
    range: string