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Class: Image3D

A 3D volume or tomogram

URI: biostride_schema:Image3D

classDiagram class Image3D click Image3D href "../Image3D/" Image <|-- Image3D click Image href "../Image/" Image3D : acquisition_date Image3D : description Image3D : dimensions_x Image3D : dimensions_y Image3D : dimensions_z Image3D : dose Image3D : exposure_time Image3D : file_name Image3D : id Image3D : pixel_size Image3D : reconstruction_method Image3D : title Image3D : voxel_size

Inheritance

Slots

Name Cardinality and Range Description Inheritance
dimensions_z 0..1
Integer		 Image depth in pixels/slices direct
voxel_size 0..1
Float		 Voxel size in Angstroms direct
reconstruction_method 0..1
String		 Method used for 3D reconstruction direct
file_name 1
String		 Image file name Image
acquisition_date 0..1
String		 Date image was acquired Image
pixel_size 0..1
Float		 Pixel size in Angstroms Image
dimensions_x 0..1
Integer		 Image width in pixels Image
dimensions_y 0..1
Integer		 Image height in pixels Image
exposure_time 0..1
Float		 Exposure time in seconds Image
dose 0..1
Float		 Electron dose in e-/Ų Image
id 1
Uriorcurie		 NamedThing
title 0..1
String		 NamedThing
description 0..1
String		 NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biostride/

Mappings

Mapping Type Mapped Value
self biostride_schema:Image3D
native biostride_schema:Image3D

LinkML Source

Direct

name: Image3D
description: A 3D volume or tomogram
from_schema: https://w3id.org/biostride/
is_a: Image
attributes:
  dimensions_z:
    name: dimensions_z
    description: Image depth in pixels/slices
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - Image3D
    range: integer
  voxel_size:
    name: voxel_size
    description: Voxel size in Angstroms
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - Image3D
    range: float
  reconstruction_method:
    name: reconstruction_method
    description: Method used for 3D reconstruction
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - Image3D

Induced

name: Image3D
description: A 3D volume or tomogram
from_schema: https://w3id.org/biostride/
is_a: Image
attributes:
  dimensions_z:
    name: dimensions_z
    description: Image depth in pixels/slices
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dimensions_z
    owner: Image3D
    domain_of:
    - Image3D
    range: integer
  voxel_size:
    name: voxel_size
    description: Voxel size in Angstroms
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: voxel_size
    owner: Image3D
    domain_of:
    - Image3D
    range: float
  reconstruction_method:
    name: reconstruction_method
    description: Method used for 3D reconstruction
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: reconstruction_method
    owner: Image3D
    domain_of:
    - Image3D
    range: string
  file_name:
    name: file_name
    description: Image file name
    from_schema: https://w3id.org/biostride/
    alias: file_name
    owner: Image3D
    domain_of:
    - DataFile
    - Image
    range: string
    required: true
  acquisition_date:
    name: acquisition_date
    description: Date image was acquired
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: acquisition_date
    owner: Image3D
    domain_of:
    - Image
    range: string
  pixel_size:
    name: pixel_size
    description: Pixel size in Angstroms
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: pixel_size
    owner: Image3D
    domain_of:
    - Image
    range: float
  dimensions_x:
    name: dimensions_x
    description: Image width in pixels
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dimensions_x
    owner: Image3D
    domain_of:
    - Image
    range: integer
  dimensions_y:
    name: dimensions_y
    description: Image height in pixels
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dimensions_y
    owner: Image3D
    domain_of:
    - Image
    range: integer
  exposure_time:
    name: exposure_time
    description: Exposure time in seconds
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: exposure_time
    owner: Image3D
    domain_of:
    - Image
    - ExperimentalConditions
    range: float
  dose:
    name: dose
    description: Electron dose in e-/Ų
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dose
    owner: Image3D
    domain_of:
    - Image
    range: float
  id:
    name: id
    from_schema: https://w3id.org/biostride/
    rank: 1000
    identifier: true
    alias: id
    owner: Image3D
    domain_of:
    - NamedThing
    - OntologyTerm
    range: uriorcurie
    required: true
  title:
    name: title
    from_schema: https://w3id.org/biostride/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: Image3D
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: description
    owner: Image3D
    domain_of:
    - NamedThing
    range: string