Class: OpticalImage

Visible light optical microscopy or photography image

classDiagram class OpticalImage click OpticalImage href "../OpticalImage/" Image2D <|-- OpticalImage click Image2D href "../Image2D/" OpticalImage : acquisition_date OpticalImage : astigmatism OpticalImage : color_channels OpticalImage : contrast_method OpticalImage : defocus OpticalImage : description OpticalImage : dimensions_x OpticalImage : dimensions_y OpticalImage : dose OpticalImage : exposure_time OpticalImage : file_name OpticalImage : id OpticalImage : illumination_type OpticalImage --> "0..1" IlluminationTypeEnum : illumination_type click IlluminationTypeEnum href "../IlluminationTypeEnum/" OpticalImage : magnification OpticalImage : numerical_aperture OpticalImage : pixel_size OpticalImage : title OpticalImage : white_balance

Inheritance

NamedThing
- Image
  - Image2D
    - OpticalImage

Slots

Name	Cardinality and Range	Description	Inheritance
illumination_type	0..1 IlluminationTypeEnum	Type of illumination (brightfield, darkfield, phase contrast, DIC)	direct
magnification	0..1 Float	Optical magnification factor	direct
numerical_aperture	0..1 Float	Numerical aperture of the objective lens	direct
color_channels	* String	Color channels present (e	direct
white_balance	0..1 String	White balance settings	direct
contrast_method	0..1 String	Contrast enhancement method used	direct
defocus	0..1 Float	Defocus value in micrometers	Image2D
astigmatism	0..1 Float	Astigmatism value	Image2D
file_name	1 String	Image file name	Image
acquisition_date	0..1 String	Date image was acquired	Image
pixel_size	0..1 Float	Pixel size in Angstroms	Image
dimensions_x	0..1 Integer	Image width in pixels	Image
dimensions_y	0..1 Integer	Image height in pixels	Image
exposure_time	0..1 Float	Exposure time in seconds	Image
dose	0..1 Float	Electron dose in e-/Å²	Image
id	1 Uriorcurie		NamedThing
title	0..1 String		NamedThing
description	0..1 String		NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/biostride/

Mappings

Mapping Type	Mapped Value
self	biostride_schema:OpticalImage
native	biostride_schema:OpticalImage

LinkML Source

Direct

name: OpticalImage
description: Visible light optical microscopy or photography image
from_schema: https://w3id.org/biostride/
is_a: Image2D
attributes:
  illumination_type:
    name: illumination_type
    description: Type of illumination (brightfield, darkfield, phase contrast, DIC)
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - OpticalImage
    range: IlluminationTypeEnum
  magnification:
    name: magnification
    description: Optical magnification factor
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - OpticalImage
    range: float
  numerical_aperture:
    name: numerical_aperture
    description: Numerical aperture of the objective lens
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - OpticalImage
    range: float
  color_channels:
    name: color_channels
    description: Color channels present (e.g., RGB, grayscale)
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - OpticalImage
    range: string
    multivalued: true
  white_balance:
    name: white_balance
    description: White balance settings
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - OpticalImage
    range: string
  contrast_method:
    name: contrast_method
    description: Contrast enhancement method used
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - OpticalImage
    range: string

Induced

name: OpticalImage
description: Visible light optical microscopy or photography image
from_schema: https://w3id.org/biostride/
is_a: Image2D
attributes:
  illumination_type:
    name: illumination_type
    description: Type of illumination (brightfield, darkfield, phase contrast, DIC)
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: illumination_type
    owner: OpticalImage
    domain_of:
    - OpticalImage
    range: IlluminationTypeEnum
  magnification:
    name: magnification
    description: Optical magnification factor
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: magnification
    owner: OpticalImage
    domain_of:
    - OpticalImage
    range: float
  numerical_aperture:
    name: numerical_aperture
    description: Numerical aperture of the objective lens
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: numerical_aperture
    owner: OpticalImage
    domain_of:
    - OpticalImage
    range: float
  color_channels:
    name: color_channels
    description: Color channels present (e.g., RGB, grayscale)
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: color_channels
    owner: OpticalImage
    domain_of:
    - OpticalImage
    range: string
    multivalued: true
  white_balance:
    name: white_balance
    description: White balance settings
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: white_balance
    owner: OpticalImage
    domain_of:
    - OpticalImage
    range: string
  contrast_method:
    name: contrast_method
    description: Contrast enhancement method used
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: contrast_method
    owner: OpticalImage
    domain_of:
    - OpticalImage
    range: string
  defocus:
    name: defocus
    description: Defocus value in micrometers
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: defocus
    owner: OpticalImage
    domain_of:
    - Image2D
    range: float
  astigmatism:
    name: astigmatism
    description: Astigmatism value
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: astigmatism
    owner: OpticalImage
    domain_of:
    - Image2D
    range: float
  file_name:
    name: file_name
    description: Image file name
    from_schema: https://w3id.org/biostride/
    alias: file_name
    owner: OpticalImage
    domain_of:
    - DataFile
    - Image
    range: string
    required: true
  acquisition_date:
    name: acquisition_date
    description: Date image was acquired
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: acquisition_date
    owner: OpticalImage
    domain_of:
    - Image
    range: string
  pixel_size:
    name: pixel_size
    description: Pixel size in Angstroms
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: pixel_size
    owner: OpticalImage
    domain_of:
    - Image
    range: float
  dimensions_x:
    name: dimensions_x
    description: Image width in pixels
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dimensions_x
    owner: OpticalImage
    domain_of:
    - Image
    range: integer
  dimensions_y:
    name: dimensions_y
    description: Image height in pixels
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dimensions_y
    owner: OpticalImage
    domain_of:
    - Image
    range: integer
  exposure_time:
    name: exposure_time
    description: Exposure time in seconds
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: exposure_time
    owner: OpticalImage
    domain_of:
    - Image
    - ExperimentalConditions
    range: float
  dose:
    name: dose
    description: Electron dose in e-/Å²
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dose
    owner: OpticalImage
    domain_of:
    - Image
    range: float
  id:
    name: id
    from_schema: https://w3id.org/biostride/
    rank: 1000
    identifier: true
    alias: id
    owner: OpticalImage
    domain_of:
    - NamedThing
    - OntologyTerm
    range: uriorcurie
    required: true
  title:
    name: title
    from_schema: https://w3id.org/biostride/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: OpticalImage
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: description
    owner: OpticalImage
    domain_of:
    - NamedThing
    range: string