Skip to content

Class: WorkflowRun

A computational processing workflow execution

URI: biostride_schema:WorkflowRun

classDiagram class WorkflowRun click WorkflowRun href "../WorkflowRun/" NamedThing <|-- WorkflowRun click NamedThing href "../NamedThing/" WorkflowRun : completed_at WorkflowRun : compute_resources WorkflowRun --> "0..1" ComputeResources : compute_resources click ComputeResources href "../ComputeResources/" WorkflowRun : description WorkflowRun : experiment_id WorkflowRun : id WorkflowRun : output_files WorkflowRun --> "*" DataFile : output_files click DataFile href "../DataFile/" WorkflowRun : processing_level WorkflowRun : processing_parameters WorkflowRun : software_name WorkflowRun : software_version WorkflowRun : started_at WorkflowRun : title WorkflowRun : workflow_code WorkflowRun : workflow_type WorkflowRun --> "1" WorkflowTypeEnum : workflow_type click WorkflowTypeEnum href "../WorkflowTypeEnum/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
workflow_code 1
String		 Unique workflow identifier direct
workflow_type 1
WorkflowTypeEnum		 Type of processing workflow direct
experiment_id 1
String		 Reference to the source experiment direct
processing_level 0..1
Integer		 Processing level (0=raw, 1=corrected, 2=derived, 3=model) direct
software_name 1
String		 Software used for processing direct
software_version 0..1
String		 Software version direct
processing_parameters 0..1
String		 Parameters used in processing direct
compute_resources 0..1
ComputeResources		 Computational resources used direct
started_at 0..1
String		 Workflow start time direct
completed_at 0..1
String		 Workflow completion time direct
output_files *
DataFile		 Output files generated direct
id 1
Uriorcurie		 NamedThing
title 0..1
String		 NamedThing
description 0..1
String		 NamedThing

Usages

used by used in type used
Study workflow_runs range WorkflowRun

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biostride/

Mappings

Mapping Type Mapped Value
self biostride_schema:WorkflowRun
native biostride_schema:WorkflowRun

LinkML Source

Direct

name: WorkflowRun
description: A computational processing workflow execution
from_schema: https://w3id.org/biostride/
is_a: NamedThing
attributes:
  workflow_code:
    name: workflow_code
    description: Unique workflow identifier
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - WorkflowRun
    required: true
  workflow_type:
    name: workflow_type
    description: Type of processing workflow
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - WorkflowRun
    range: WorkflowTypeEnum
    required: true
  experiment_id:
    name: experiment_id
    description: Reference to the source experiment
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - WorkflowRun
    range: string
    required: true
  processing_level:
    name: processing_level
    description: Processing level (0=raw, 1=corrected, 2=derived, 3=model)
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - WorkflowRun
    range: integer
    minimum_value: 0
    maximum_value: 4
  software_name:
    name: software_name
    description: Software used for processing
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - WorkflowRun
    required: true
  software_version:
    name: software_version
    description: Software version
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - WorkflowRun
  processing_parameters:
    name: processing_parameters
    description: Parameters used in processing
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - WorkflowRun
  compute_resources:
    name: compute_resources
    description: Computational resources used
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - WorkflowRun
    range: ComputeResources
  started_at:
    name: started_at
    description: Workflow start time
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - WorkflowRun
    range: string
  completed_at:
    name: completed_at
    description: Workflow completion time
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - WorkflowRun
    range: string
  output_files:
    name: output_files
    description: Output files generated
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - WorkflowRun
    range: DataFile
    multivalued: true

Induced

name: WorkflowRun
description: A computational processing workflow execution
from_schema: https://w3id.org/biostride/
is_a: NamedThing
attributes:
  workflow_code:
    name: workflow_code
    description: Unique workflow identifier
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: workflow_code
    owner: WorkflowRun
    domain_of:
    - WorkflowRun
    range: string
    required: true
  workflow_type:
    name: workflow_type
    description: Type of processing workflow
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: workflow_type
    owner: WorkflowRun
    domain_of:
    - WorkflowRun
    range: WorkflowTypeEnum
    required: true
  experiment_id:
    name: experiment_id
    description: Reference to the source experiment
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: experiment_id
    owner: WorkflowRun
    domain_of:
    - WorkflowRun
    range: string
    required: true
  processing_level:
    name: processing_level
    description: Processing level (0=raw, 1=corrected, 2=derived, 3=model)
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: processing_level
    owner: WorkflowRun
    domain_of:
    - WorkflowRun
    range: integer
    minimum_value: 0
    maximum_value: 4
  software_name:
    name: software_name
    description: Software used for processing
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: software_name
    owner: WorkflowRun
    domain_of:
    - WorkflowRun
    range: string
    required: true
  software_version:
    name: software_version
    description: Software version
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: software_version
    owner: WorkflowRun
    domain_of:
    - WorkflowRun
    range: string
  processing_parameters:
    name: processing_parameters
    description: Parameters used in processing
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: processing_parameters
    owner: WorkflowRun
    domain_of:
    - WorkflowRun
    range: string
  compute_resources:
    name: compute_resources
    description: Computational resources used
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: compute_resources
    owner: WorkflowRun
    domain_of:
    - WorkflowRun
    range: ComputeResources
  started_at:
    name: started_at
    description: Workflow start time
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: started_at
    owner: WorkflowRun
    domain_of:
    - WorkflowRun
    range: string
  completed_at:
    name: completed_at
    description: Workflow completion time
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: completed_at
    owner: WorkflowRun
    domain_of:
    - WorkflowRun
    range: string
  output_files:
    name: output_files
    description: Output files generated
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: output_files
    owner: WorkflowRun
    domain_of:
    - WorkflowRun
    range: DataFile
    multivalued: true
  id:
    name: id
    from_schema: https://w3id.org/biostride/
    rank: 1000
    identifier: true
    alias: id
    owner: WorkflowRun
    domain_of:
    - NamedThing
    - OntologyTerm
    range: uriorcurie
    required: true
  title:
    name: title
    from_schema: https://w3id.org/biostride/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: WorkflowRun
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: description
    owner: WorkflowRun
    domain_of:
    - NamedThing
    range: string