Class: XRFImage

X-ray fluorescence (XRF) image showing elemental distribution

classDiagram class XRFImage click XRFImage href "../XRFImage/" Image2D <|-- XRFImage click Image2D href "../Image2D/" XRFImage : acquisition_date XRFImage : astigmatism XRFImage : beam_energy XRFImage : beam_size XRFImage : calibration_standard XRFImage : defocus XRFImage : description XRFImage : detector_type XRFImage : dimensions_x XRFImage : dimensions_y XRFImage : dose XRFImage : dwell_time XRFImage : elements_measured XRFImage : exposure_time XRFImage : file_name XRFImage : flux XRFImage : id XRFImage : pixel_size XRFImage : source_type XRFImage --> "0..1" XRaySourceTypeEnum : source_type click XRaySourceTypeEnum href "../XRaySourceTypeEnum/" XRFImage : title

Inheritance

NamedThing
- Image
  - Image2D
    - XRFImage

Slots

Name	Cardinality and Range	Description	Inheritance
beam_energy	0..1 Float	X-ray beam energy in keV	direct
beam_size	0..1 Float	X-ray beam size in micrometers	direct
dwell_time	0..1 Float	Dwell time per pixel in milliseconds	direct
elements_measured	* String	Elements detected and measured	direct
source_type	0..1 XRaySourceTypeEnum	X-ray source type (synchrotron or lab-source)	direct
detector_type	0..1 String	Type of X-ray detector used	direct
flux	0..1 Float	Photon flux in photons/second	direct
calibration_standard	0..1 String	Reference standard used for calibration	direct
defocus	0..1 Float	Defocus value in micrometers	Image2D
astigmatism	0..1 Float	Astigmatism value	Image2D
file_name	1 String	Image file name	Image
acquisition_date	0..1 String	Date image was acquired	Image
pixel_size	0..1 Float	Pixel size in Angstroms	Image
dimensions_x	0..1 Integer	Image width in pixels	Image
dimensions_y	0..1 Integer	Image height in pixels	Image
exposure_time	0..1 Float	Exposure time in seconds	Image
dose	0..1 Float	Electron dose in e-/Å²	Image
id	1 Uriorcurie		NamedThing
title	0..1 String		NamedThing
description	0..1 String		NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/biostride/

Mappings

Mapping Type	Mapped Value
self	biostride_schema:XRFImage
native	biostride_schema:XRFImage

LinkML Source

Direct

name: XRFImage
description: X-ray fluorescence (XRF) image showing elemental distribution
from_schema: https://w3id.org/biostride/
is_a: Image2D
attributes:
  beam_energy:
    name: beam_energy
    description: X-ray beam energy in keV
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - XRFImage
    - ExperimentalConditions
    range: float
  beam_size:
    name: beam_size
    description: X-ray beam size in micrometers
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - XRFImage
    range: float
  dwell_time:
    name: dwell_time
    description: Dwell time per pixel in milliseconds
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - XRFImage
    range: float
  elements_measured:
    name: elements_measured
    description: Elements detected and measured
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - XRFImage
    range: string
    multivalued: true
  source_type:
    name: source_type
    description: X-ray source type (synchrotron or lab-source)
    from_schema: https://w3id.org/biostride/
    domain_of:
    - XRayInstrument
    - XRFImage
    range: XRaySourceTypeEnum
  detector_type:
    name: detector_type
    description: Type of X-ray detector used
    from_schema: https://w3id.org/biostride/
    domain_of:
    - CryoEMInstrument
    - XRFImage
    range: string
  flux:
    name: flux
    description: Photon flux in photons/second
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - XRFImage
    range: float
  calibration_standard:
    name: calibration_standard
    description: Reference standard used for calibration
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - XRFImage
    range: string

Induced

name: XRFImage
description: X-ray fluorescence (XRF) image showing elemental distribution
from_schema: https://w3id.org/biostride/
is_a: Image2D
attributes:
  beam_energy:
    name: beam_energy
    description: X-ray beam energy in keV
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: beam_energy
    owner: XRFImage
    domain_of:
    - XRFImage
    - ExperimentalConditions
    range: float
  beam_size:
    name: beam_size
    description: X-ray beam size in micrometers
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: beam_size
    owner: XRFImage
    domain_of:
    - XRFImage
    range: float
  dwell_time:
    name: dwell_time
    description: Dwell time per pixel in milliseconds
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dwell_time
    owner: XRFImage
    domain_of:
    - XRFImage
    range: float
  elements_measured:
    name: elements_measured
    description: Elements detected and measured
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: elements_measured
    owner: XRFImage
    domain_of:
    - XRFImage
    range: string
    multivalued: true
  source_type:
    name: source_type
    description: X-ray source type (synchrotron or lab-source)
    from_schema: https://w3id.org/biostride/
    alias: source_type
    owner: XRFImage
    domain_of:
    - XRayInstrument
    - XRFImage
    range: XRaySourceTypeEnum
  detector_type:
    name: detector_type
    description: Type of X-ray detector used
    from_schema: https://w3id.org/biostride/
    alias: detector_type
    owner: XRFImage
    domain_of:
    - CryoEMInstrument
    - XRFImage
    range: string
  flux:
    name: flux
    description: Photon flux in photons/second
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: flux
    owner: XRFImage
    domain_of:
    - XRFImage
    range: float
  calibration_standard:
    name: calibration_standard
    description: Reference standard used for calibration
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: calibration_standard
    owner: XRFImage
    domain_of:
    - XRFImage
    range: string
  defocus:
    name: defocus
    description: Defocus value in micrometers
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: defocus
    owner: XRFImage
    domain_of:
    - Image2D
    range: float
  astigmatism:
    name: astigmatism
    description: Astigmatism value
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: astigmatism
    owner: XRFImage
    domain_of:
    - Image2D
    range: float
  file_name:
    name: file_name
    description: Image file name
    from_schema: https://w3id.org/biostride/
    alias: file_name
    owner: XRFImage
    domain_of:
    - DataFile
    - Image
    range: string
    required: true
  acquisition_date:
    name: acquisition_date
    description: Date image was acquired
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: acquisition_date
    owner: XRFImage
    domain_of:
    - Image
    range: string
  pixel_size:
    name: pixel_size
    description: Pixel size in Angstroms
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: pixel_size
    owner: XRFImage
    domain_of:
    - Image
    range: float
  dimensions_x:
    name: dimensions_x
    description: Image width in pixels
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dimensions_x
    owner: XRFImage
    domain_of:
    - Image
    range: integer
  dimensions_y:
    name: dimensions_y
    description: Image height in pixels
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dimensions_y
    owner: XRFImage
    domain_of:
    - Image
    range: integer
  exposure_time:
    name: exposure_time
    description: Exposure time in seconds
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: exposure_time
    owner: XRFImage
    domain_of:
    - Image
    - ExperimentalConditions
    range: float
  dose:
    name: dose
    description: Electron dose in e-/Å²
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: dose
    owner: XRFImage
    domain_of:
    - Image
    range: float
  id:
    name: id
    from_schema: https://w3id.org/biostride/
    rank: 1000
    identifier: true
    alias: id
    owner: XRFImage
    domain_of:
    - NamedThing
    - OntologyTerm
    range: uriorcurie
    required: true
  title:
    name: title
    from_schema: https://w3id.org/biostride/
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: XRFImage
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: description
    owner: XRFImage
    domain_of:
    - NamedThing
    range: string