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Class: XRayPreparation

X-ray crystallography specific preparation

URI: biostride_schema:XRayPreparation

classDiagram class XRayPreparation click XRayPreparation href "../XRayPreparation/" TechniqueSpecificPreparation <|-- XRayPreparation click TechniqueSpecificPreparation href "../TechniqueSpecificPreparation/" XRayPreparation : cryoprotectant XRayPreparation : cryoprotectant_concentration XRayPreparation : crystal_size XRayPreparation : crystallization_conditions XRayPreparation : crystallization_method XRayPreparation --> "0..1" CrystallizationMethodEnum : crystallization_method click CrystallizationMethodEnum href "../CrystallizationMethodEnum/" XRayPreparation : flash_cooling_method XRayPreparation : mounting_method

Inheritance

Slots

Name Cardinality and Range Description Inheritance
crystallization_method 0..1
CrystallizationMethodEnum		 Method used for crystallization direct
crystallization_conditions 0..1
String		 Detailed crystallization conditions direct
crystal_size 0..1
String		 Crystal dimensions in micrometers direct
cryoprotectant 0..1
String		 Cryoprotectant used direct
cryoprotectant_concentration 0..1
Float		 Cryoprotectant concentration percentage direct
mounting_method 0..1
String		 Crystal mounting method direct
flash_cooling_method 0..1
String		 Flash cooling protocol direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biostride/

Mappings

Mapping Type Mapped Value
self biostride_schema:XRayPreparation
native biostride_schema:XRayPreparation

LinkML Source

Direct

name: XRayPreparation
description: X-ray crystallography specific preparation
from_schema: https://w3id.org/biostride/
is_a: TechniqueSpecificPreparation
attributes:
  crystallization_method:
    name: crystallization_method
    description: Method used for crystallization
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - XRayPreparation
    range: CrystallizationMethodEnum
  crystallization_conditions:
    name: crystallization_conditions
    description: Detailed crystallization conditions
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - XRayPreparation
  crystal_size:
    name: crystal_size
    description: Crystal dimensions in micrometers
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - XRayPreparation
  cryoprotectant:
    name: cryoprotectant
    description: Cryoprotectant used
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - XRayPreparation
    range: string
  cryoprotectant_concentration:
    name: cryoprotectant_concentration
    description: Cryoprotectant concentration percentage
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - XRayPreparation
    range: float
  mounting_method:
    name: mounting_method
    description: Crystal mounting method
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - XRayPreparation
  flash_cooling_method:
    name: flash_cooling_method
    description: Flash cooling protocol
    from_schema: https://w3id.org/biostride/
    rank: 1000
    domain_of:
    - XRayPreparation

Induced

name: XRayPreparation
description: X-ray crystallography specific preparation
from_schema: https://w3id.org/biostride/
is_a: TechniqueSpecificPreparation
attributes:
  crystallization_method:
    name: crystallization_method
    description: Method used for crystallization
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: crystallization_method
    owner: XRayPreparation
    domain_of:
    - XRayPreparation
    range: CrystallizationMethodEnum
  crystallization_conditions:
    name: crystallization_conditions
    description: Detailed crystallization conditions
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: crystallization_conditions
    owner: XRayPreparation
    domain_of:
    - XRayPreparation
    range: string
  crystal_size:
    name: crystal_size
    description: Crystal dimensions in micrometers
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: crystal_size
    owner: XRayPreparation
    domain_of:
    - XRayPreparation
    range: string
  cryoprotectant:
    name: cryoprotectant
    description: Cryoprotectant used
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: cryoprotectant
    owner: XRayPreparation
    domain_of:
    - XRayPreparation
    range: string
  cryoprotectant_concentration:
    name: cryoprotectant_concentration
    description: Cryoprotectant concentration percentage
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: cryoprotectant_concentration
    owner: XRayPreparation
    domain_of:
    - XRayPreparation
    range: float
  mounting_method:
    name: mounting_method
    description: Crystal mounting method
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: mounting_method
    owner: XRayPreparation
    domain_of:
    - XRayPreparation
    range: string
  flash_cooling_method:
    name: flash_cooling_method
    description: Flash cooling protocol
    from_schema: https://w3id.org/biostride/
    rank: 1000
    alias: flash_cooling_method
    owner: XRayPreparation
    domain_of:
    - XRayPreparation
    range: string