JGI Genome Citation Service

Citation and publication tracking database for JGI genomes. Tracks genome citations, publications, concepts, and related metadata. DATABASE: gcs-vm-1 postgresql.public TABLES: 40 KEY FUNCTIONALITY: - Track genome citations and publications - Concept/entity recognition from literature - Document and publication indexing - Citation statistics and reporting

URI: https://w3id.org/jgi/gcs_citation

Name: gcs_citation

Classes

Class	Description
ApiAccessLog	API access logging
Concept	Named concept/entity extracted from literature (gene, organism, etc
ConceptIdentifier	External identifier for a concept (NCBI Gene ID, taxonomy ID, etc
ConceptIdentifierType	Type of concept identifier (NCBI Gene, NCBI Taxonomy, etc
ConceptRelation	Relationship between two concepts
Corpus	Collection of documents (e
Document	Document/publication record
DocumentConcept	Link between documents and concepts mentioned in them
GenomeCitationReport	Citation report for a genome/project
GenomeCitationStatistics	Aggregated citation statistics for genomes
Institution	Research institution
JgiMetadata	JGI-specific metadata records
MeshKeyword	MeSH (Medical Subject Headings) keyword
Publication	Publication metadata (journal article, preprint, etc
Publisher	Journal publisher

Slots

Slot	Description
abstract
citation_count
concept_luid
corpus_id
document_id
doi	Digital Object Identifier
endpoint
genome_id
id
identifier_type_id
journal
luid	Local unique identifier
name	Identifier type name
object_luid
pmid	PubMed ID
relation_type
subject_luid
term
timestamp
title
total_citations
type	Concept type (relation, gene, organism, etc
value	The identifier value
year
year_count

Enumerations

Enumeration	Description

Types

Type	Description
Boolean	A binary (true or false) value
Curie	a compact URI
Date	a date (year, month and day) in an idealized calendar
DateOrDatetime	Either a date or a datetime
Datetime	The combination of a date and time
Decimal	A real number with arbitrary precision that conforms to the xsd:decimal speci...
Double	A real number that conforms to the xsd:double specification
Float	A real number that conforms to the xsd:float specification
Integer	An integer
Jsonpath	A string encoding a JSON Path
Jsonpointer	A string encoding a JSON Pointer
Ncname	Prefix part of CURIE
Nodeidentifier	A URI, CURIE or BNODE that represents a node in a model
Objectidentifier	A URI or CURIE that represents an object in the model
Sparqlpath	A string encoding a SPARQL Property Path
String	A character string
Time	A time object represents a (local) time of day, independent of any particular...
Uri	a complete URI
Uriorcurie	a URI or a CURIE

Subsets

Subset	Description