Class: AnalysisProject

URI: gold:AnalysisProject

classDiagram class AnalysisProject click AnalysisProject href "../AnalysisProject/" AnalysisProject : add_date AnalysisProject : added_by AnalysisProject : analysis_project_id AnalysisProject : analysis_project_name AnalysisProject : analysis_project_name_full AnalysisProject : analysis_project_type AnalysisProject : analysis_system AnalysisProject : annotator_comments AnalysisProject : ap_for_nonowner AnalysisProject : appended_ap_name AnalysisProject : bin_param AnalysisProject : binning_method AnalysisProject : comments AnalysisProject : compl_appr AnalysisProject : completeness_percentage AnalysisProject : completion AnalysisProject : completion_date AnalysisProject : contamination_percentage AnalysisProject : contig_count AnalysisProject : culture_collection AnalysisProject : decontamination_method AnalysisProject : domain AnalysisProject : ecosystem AnalysisProject : ecosystem_category AnalysisProject : ecosystem_path_id AnalysisProject : ecosystem_subtype AnalysisProject : ecosystem_type AnalysisProject : est_size AnalysisProject : genbank_low_quality_annotation AnalysisProject : gene_calling_method AnalysisProject : gene_count AnalysisProject : genus AnalysisProject : gold_id AnalysisProject : gold_phylogeny AnalysisProject : gtdb_class AnalysisProject : gtdb_family AnalysisProject : gtdb_genus AnalysisProject : gtdb_order AnalysisProject : gtdb_phylum AnalysisProject : gtdb_species AnalysisProject : gtdb_superkingdom AnalysisProject : gtdb_taxonomy_lineage AnalysisProject : gtdb_version_id AnalysisProject : img_analysis_complete AnalysisProject : img_annotation_version AnalysisProject : img_bin_count AnalysisProject : img_predicted_plasmid_contigs AnalysisProject : img_predicted_viral_contigs AnalysisProject : img_rnaseq_id AnalysisProject : img_submission_prority AnalysisProject : img_taxon_id AnalysisProject : img_use AnalysisProject : is_assembled_deleted AnalysisProject : is_decontamination AnalysisProject : is_img_annotation AnalysisProject : is_primary AnalysisProject : is_public AnalysisProject : is_test AnalysisProject : its_analysis_project_id AnalysisProject : its_analysis_project_name AnalysisProject : its_annotation_at_id AnalysisProject : its_assembly_at_type AnalysisProject : its_data_utilization_status AnalysisProject : its_ncbi_tax_id AnalysisProject : its_product_name AnalysisProject : its_version_number AnalysisProject : mag_cov_software AnalysisProject : mod_by AnalysisProject : mod_date AnalysisProject : ncbi_bioproject_accession AnalysisProject : ncbi_bioproject_id AnalysisProject : ncbi_biosample_accession AnalysisProject : ncbi_class AnalysisProject : ncbi_family AnalysisProject : ncbi_genus AnalysisProject : ncbi_kingdom AnalysisProject : ncbi_order AnalysisProject : ncbi_phylum AnalysisProject : ncbi_species AnalysisProject : ncbi_superkingdom AnalysisProject : ncbi_tax_id AnalysisProject : ncbi_taxonomy_lineage AnalysisProject : organism_id AnalysisProject --> "0..1" OrganismV2 : organism_id click OrganismV2 href "../OrganismV2/" AnalysisProject : phylogeny_suggestion AnalysisProject : pi_id AnalysisProject : pi_name AnalysisProject : pipeline_annotation_method AnalysisProject : reassembly_bin AnalysisProject : recover_16s AnalysisProject : recover_16s_software AnalysisProject : reference_ap_id AnalysisProject --> "0..1" AnalysisProject : reference_ap_id click AnalysisProject href "../AnalysisProject/" AnalysisProject : rejection_reasons AnalysisProject : replaces_ap_id AnalysisProject --> "0..1" AnalysisProject : replaces_ap_id click AnalysisProject href "../AnalysisProject/" AnalysisProject : review_status AnalysisProject : scaffold_count AnalysisProject : screening_method AnalysisProject : sequencing_depth AnalysisProject : serovar AnalysisProject : sim_search_meth AnalysisProject : species AnalysisProject : specific_ecosystem AnalysisProject : specimen AnalysisProject : status_id AnalysisProject --> "0..1" CvapStatus : status_id click CvapStatus href "../CvapStatus/" AnalysisProject : strain AnalysisProject : study_id AnalysisProject --> "0..1" Study : study_id click Study href "../Study/" AnalysisProject : submission_comments AnalysisProject : submission_id AnalysisProject : submission_status_id AnalysisProject : submission_status_name AnalysisProject : subspecies AnalysisProject : suggest_img_annotation_version AnalysisProject : trna_pred_software AnalysisProject : trnas

Slots

Name	Cardinality and Range	Description	Inheritance
analysis_project_id	0..1 Float		direct
status_id	0..1 CvapStatus	Foreign key to cvap_status	direct
is_public	0..1 String		direct
added_by	0..1 Float		direct
add_date	0..1 Datetime		direct
mod_date	0..1 Datetime		direct
mod_by	0..1 Float		direct
its_analysis_project_id	0..1 Float		direct
is_primary	0..1 String		direct
gold_id	0..1 String		direct
analysis_project_name	0..1 String		direct
appended_ap_name	0..1 String		direct
analysis_project_name_full	0..1 String		direct
its_analysis_project_name	0..1 String		direct
its_product_name	0..1 String		direct
analysis_project_type	0..1 String		direct
img_submission_prority	0..1 String		direct
submission_id	0..1 Float		direct
img_taxon_id	0..1 Float		direct
completion_date	0..1 Datetime		direct
reference_ap_id	0..1 AnalysisProject	Foreign key to analysis_project	direct
replaces_ap_id	0..1 AnalysisProject	Foreign key to analysis_project	direct
comments	0..1 String		direct
annotator_comments	0..1 String		direct
review_status	0..1 String		direct
rejection_reasons	0..1 String		direct
pi_id	0..1 Float		direct
pi_name	0..1 String		direct
est_size	0..1 Float		direct
scaffold_count	0..1 Float		direct
contig_count	0..1 Float		direct
gene_count	0..1 Float		direct
binning_method	0..1 String		direct
contamination_percentage	0..1 Float		direct
completeness_percentage	0..1 Float		direct
img_bin_count	0..1 Float		direct
bin_param	0..1 String		direct
reassembly_bin	0..1 String		direct
gene_calling_method	0..1 String		direct
sequencing_depth	0..1 String		direct
genbank_low_quality_annotation	0..1 String		direct
completion	0..1 String		direct
pipeline_annotation_method	0..1 String		direct
is_img_annotation	0..1 String		direct
img_annotation_version	0..1 String		direct
specimen	0..1 String		direct
its_annotation_at_id	0..1 Float		direct
its_assembly_at_type	0..1 String		direct
its_ncbi_tax_id	0..1 Float		direct
its_version_number	0..1 Float		direct
is_decontamination	0..1 String		direct
screening_method	0..1 String		direct
decontamination_method	0..1 String		direct
img_use	0..1 String		direct
img_rnaseq_id	0..1 Float		direct
submission_status_id	0..1 Float		direct
submission_status_name	0..1 String		direct
submission_comments	0..1 String		direct
img_analysis_complete	0..1 String		direct
ap_for_nonowner	0..1 String		direct
is_assembled_deleted	0..1 String		direct
trnas	0..1 Float		direct
trna_pred_software	0..1 String		direct
sim_search_meth	0..1 String		direct
recover_16s	0..1 String		direct
recover_16s_software	0..1 String		direct
compl_appr	0..1 String		direct
mag_cov_software	0..1 String		direct
organism_id	0..1 OrganismV2	Foreign key to organism_v2	direct
domain	0..1 String		direct
gold_phylogeny	0..1 String		direct
phylogeny_suggestion	0..1 String		direct
genus	0..1 String		direct
species	0..1 String		direct
subspecies	0..1 String		direct
strain	0..1 String		direct
serovar	0..1 String		direct
culture_collection	0..1 String		direct
ncbi_tax_id	0..1 Float		direct
ncbi_superkingdom	0..1 String		direct
ncbi_kingdom	0..1 String		direct
ncbi_phylum	0..1 String		direct
ncbi_class	0..1 String		direct
ncbi_order	0..1 String		direct
ncbi_family	0..1 String		direct
ncbi_genus	0..1 String		direct
ncbi_species	0..1 String		direct
ncbi_biosample_accession	0..1 String		direct
ncbi_bioproject_accession	0..1 String		direct
ncbi_bioproject_id	0..1 Float		direct
ncbi_taxonomy_lineage	0..1 String		direct
study_id	0..1 Study	Foreign key to study	direct
ecosystem_path_id	0..1 Float		direct
ecosystem	0..1 String		direct
ecosystem_category	0..1 String		direct
ecosystem_type	0..1 String		direct
ecosystem_subtype	0..1 String		direct
specific_ecosystem	0..1 String		direct
img_predicted_viral_contigs	0..1 Float		direct
its_data_utilization_status	0..1 String		direct
analysis_system	0..1 String		direct
suggest_img_annotation_version	0..1 String		direct
gtdb_version_id	0..1 String		direct
gtdb_taxonomy_lineage	0..1 String		direct
gtdb_superkingdom	0..1 String		direct
gtdb_phylum	0..1 String		direct
gtdb_class	0..1 String		direct
gtdb_order	0..1 String		direct
gtdb_family	0..1 String		direct
gtdb_genus	0..1 String		direct
gtdb_species	0..1 String		direct
is_test	0..1 String		direct
img_predicted_plasmid_contigs	0..1 Float		direct

Usages

used by	used in	type	used
AnalysisProject	reference_ap_id	range	AnalysisProject
AnalysisProject	replaces_ap_id	range	AnalysisProject
AnalysisProjectSraRunV2	analysis_project_id	range	AnalysisProject
Assembly	analysis_project_id	range	AnalysisProject
ProjectAnalysisProject	analysis_project_id	range	AnalysisProject

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/gold

Mappings

Mapping Type	Mapped Value
self	gold:AnalysisProject
native	gold:AnalysisProject

LinkML Source

Direct

name: analysis_project
from_schema: https://w3id.org/jgi/gold
attributes:
  analysis_project_id:
    name: analysis_project_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - analysis_project_publication
    - analysis_project_sra_run_v2
    - assembly
    - dw_analysis_project
    - project_analysis_project
    - sigs_view
    range: float
    required: false
  status_id:
    name: status_id
    description: Foreign key to cvap_status
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: cvap_status
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - project
    - sra_experiment_v2
    - sra_sample_v2
    - study
    range: string
    required: false
  added_by:
    name: added_by
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - package_soil
    range: float
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - api_user
    - bacdive
    - biosample
    - excel
    - organism_v2
    - package_soil
    - project
    - study
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - api_user
    - bacdive
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - package_soil
    - project
    - study
    range: datetime
    required: false
  mod_by:
    name: mod_by
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - package_soil
    - project
    range: float
    required: false
  its_analysis_project_id:
    name: its_analysis_project_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: float
    required: false
  is_primary:
    name: is_primary
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - project
    - study
    range: string
    required: false
  analysis_project_name:
    name: analysis_project_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - dw_analysis_project
    range: string
    required: false
  appended_ap_name:
    name: appended_ap_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  analysis_project_name_full:
    name: analysis_project_name_full
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  its_analysis_project_name:
    name: its_analysis_project_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  its_product_name:
    name: its_product_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  analysis_project_type:
    name: analysis_project_type
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - sigs_view
    range: string
    required: false
  img_submission_prority:
    name: img_submission_prority
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: float
    required: false
  img_taxon_id:
    name: img_taxon_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - sigs_view
    range: float
    required: false
  completion_date:
    name: completion_date
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - project
    range: datetime
    required: false
  reference_ap_id:
    name: reference_ap_id
    description: Foreign key to analysis_project
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: analysis_project
    required: false
  replaces_ap_id:
    name: replaces_ap_id
    description: Foreign key to analysis_project
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: analysis_project
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - assembly
    - organism_v2
    range: string
    required: false
  annotator_comments:
    name: annotator_comments
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - project
    range: string
    required: false
  review_status:
    name: review_status
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  rejection_reasons:
    name: rejection_reasons
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  pi_id:
    name: pi_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - project
    range: float
    required: false
  pi_name:
    name: pi_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  est_size:
    name: est_size
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - project
    range: float
    required: false
  scaffold_count:
    name: scaffold_count
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - ncbi_assembly
    - project
    range: float
    required: false
  contig_count:
    name: contig_count
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - ncbi_assembly
    - project
    range: float
    required: false
  gene_count:
    name: gene_count
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: float
    required: false
  binning_method:
    name: binning_method
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  contamination_percentage:
    name: contamination_percentage
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: float
    required: false
  completeness_percentage:
    name: completeness_percentage
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: float
    required: false
  img_bin_count:
    name: img_bin_count
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: float
    required: false
  bin_param:
    name: bin_param
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  reassembly_bin:
    name: reassembly_bin
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  gene_calling_method:
    name: gene_calling_method
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - sigs_view
    range: string
    required: false
  sequencing_depth:
    name: sequencing_depth
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  genbank_low_quality_annotation:
    name: genbank_low_quality_annotation
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  completion:
    name: completion
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  pipeline_annotation_method:
    name: pipeline_annotation_method
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  is_img_annotation:
    name: is_img_annotation
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  img_annotation_version:
    name: img_annotation_version
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  specimen:
    name: specimen
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    range: string
    required: false
  its_annotation_at_id:
    name: its_annotation_at_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: float
    required: false
  its_assembly_at_type:
    name: its_assembly_at_type
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  its_ncbi_tax_id:
    name: its_ncbi_tax_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: float
    required: false
  its_version_number:
    name: its_version_number
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: float
    required: false
  is_decontamination:
    name: is_decontamination
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  screening_method:
    name: screening_method
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  decontamination_method:
    name: decontamination_method
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  img_use:
    name: img_use
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  img_rnaseq_id:
    name: img_rnaseq_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: float
    required: false
  submission_status_id:
    name: submission_status_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: float
    required: false
  submission_status_name:
    name: submission_status_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  submission_comments:
    name: submission_comments
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  img_analysis_complete:
    name: img_analysis_complete
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  ap_for_nonowner:
    name: ap_for_nonowner
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  is_assembled_deleted:
    name: is_assembled_deleted
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  trnas:
    name: trnas
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: float
    required: false
  trna_pred_software:
    name: trna_pred_software
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  sim_search_meth:
    name: sim_search_meth
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  recover_16s:
    name: recover_16s
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  recover_16s_software:
    name: recover_16s_software
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  compl_appr:
    name: compl_appr
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  mag_cov_software:
    name: mag_cov_software
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  organism_id:
    name: organism_id
    description: Foreign key to organism_v2
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - organism_cell_arrangement
    - organism_metabolism
    - organism_v2
    - package_soil
    - project
    range: organism_v2
    required: false
  domain:
    name: domain
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - organism_v2
    - sigs_view
    range: string
    required: false
  gold_phylogeny:
    name: gold_phylogeny
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - organism_v2
    range: string
    required: false
  phylogeny_suggestion:
    name: phylogeny_suggestion
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  genus:
    name: genus
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - organism_v2
    - sigs_view
    range: string
    required: false
  species:
    name: species
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - organism_v2
    - sigs_view
    range: string
    required: false
  subspecies:
    name: subspecies
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - organism_v2
    range: string
    required: false
  strain:
    name: strain
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - organism_v2
    range: string
    required: false
  serovar:
    name: serovar
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - organism_v2
    range: string
    required: false
  culture_collection:
    name: culture_collection
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - sigs_view
    range: string
    required: false
  ncbi_tax_id:
    name: ncbi_tax_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - dw_analysis_project
    - ncbi_taxonomy
    range: float
    required: false
  ncbi_superkingdom:
    name: ncbi_superkingdom
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    range: string
    required: false
  ncbi_kingdom:
    name: ncbi_kingdom
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    range: string
    required: false
  ncbi_phylum:
    name: ncbi_phylum
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    range: string
    required: false
  ncbi_class:
    name: ncbi_class
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    - sigs_view
    range: string
    required: false
  ncbi_order:
    name: ncbi_order
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    - sigs_view
    range: string
    required: false
  ncbi_family:
    name: ncbi_family
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    - sigs_view
    range: string
    required: false
  ncbi_genus:
    name: ncbi_genus
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    range: string
    required: false
  ncbi_species:
    name: ncbi_species
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    range: string
    required: false
  ncbi_biosample_accession:
    name: ncbi_biosample_accession
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - project
    range: string
    required: false
  ncbi_bioproject_accession:
    name: ncbi_bioproject_accession
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - project
    - sigs_view
    range: string
    required: false
  ncbi_bioproject_id:
    name: ncbi_bioproject_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - project
    range: float
    required: false
  ncbi_taxonomy_lineage:
    name: ncbi_taxonomy_lineage
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  study_id:
    name: study_id
    description: Foreign key to study
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - study
    range: study
    required: false
  ecosystem_path_id:
    name: ecosystem_path_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - study
    range: float
    required: false
  ecosystem:
    name: ecosystem
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - sigs_view
    - study
    range: string
    required: false
  ecosystem_category:
    name: ecosystem_category
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - sigs_view
    - study
    range: string
    required: false
  ecosystem_type:
    name: ecosystem_type
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - study
    range: string
    required: false
  ecosystem_subtype:
    name: ecosystem_subtype
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - study
    range: string
    required: false
  specific_ecosystem:
    name: specific_ecosystem
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - study
    range: string
    required: false
  img_predicted_viral_contigs:
    name: img_predicted_viral_contigs
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: float
    required: false
  its_data_utilization_status:
    name: its_data_utilization_status
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - project
    range: string
    required: false
  analysis_system:
    name: analysis_system
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  suggest_img_annotation_version:
    name: suggest_img_annotation_version
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_version_id:
    name: gtdb_version_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_taxonomy_lineage:
    name: gtdb_taxonomy_lineage
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_superkingdom:
    name: gtdb_superkingdom
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_phylum:
    name: gtdb_phylum
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_class:
    name: gtdb_class
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_order:
    name: gtdb_order
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_family:
    name: gtdb_family
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_genus:
    name: gtdb_genus
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_species:
    name: gtdb_species
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: string
    required: false
  is_test:
    name: is_test
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - project
    - sra_experiment_v2
    - sra_sample_v2
    - study
    range: string
    required: false
  img_predicted_plasmid_contigs:
    name: img_predicted_plasmid_contigs
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - analysis_project
    range: float
    required: false

Induced

name: analysis_project
from_schema: https://w3id.org/jgi/gold
attributes:
  analysis_project_id:
    name: analysis_project_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: analysis_project_id
    owner: analysis_project
    domain_of:
    - analysis_project
    - analysis_project_publication
    - analysis_project_sra_run_v2
    - assembly
    - dw_analysis_project
    - project_analysis_project
    - sigs_view
    range: float
    required: false
  status_id:
    name: status_id
    description: Foreign key to cvap_status
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: status_id
    owner: analysis_project
    domain_of:
    - analysis_project
    range: cvap_status
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: is_public
    owner: analysis_project
    domain_of:
    - analysis_project
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - project
    - sra_experiment_v2
    - sra_sample_v2
    - study
    range: string
    required: false
  added_by:
    name: added_by
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: added_by
    owner: analysis_project
    domain_of:
    - analysis_project
    - package_soil
    range: float
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: add_date
    owner: analysis_project
    domain_of:
    - analysis_project
    - api_user
    - bacdive
    - biosample
    - excel
    - organism_v2
    - package_soil
    - project
    - study
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: mod_date
    owner: analysis_project
    domain_of:
    - analysis_project
    - api_user
    - bacdive
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - package_soil
    - project
    - study
    range: datetime
    required: false
  mod_by:
    name: mod_by
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: mod_by
    owner: analysis_project
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - package_soil
    - project
    range: float
    required: false
  its_analysis_project_id:
    name: its_analysis_project_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: its_analysis_project_id
    owner: analysis_project
    domain_of:
    - analysis_project
    range: float
    required: false
  is_primary:
    name: is_primary
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: is_primary
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gold_id
    owner: analysis_project
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - project
    - study
    range: string
    required: false
  analysis_project_name:
    name: analysis_project_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: analysis_project_name
    owner: analysis_project
    domain_of:
    - analysis_project
    - dw_analysis_project
    range: string
    required: false
  appended_ap_name:
    name: appended_ap_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: appended_ap_name
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  analysis_project_name_full:
    name: analysis_project_name_full
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: analysis_project_name_full
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  its_analysis_project_name:
    name: its_analysis_project_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: its_analysis_project_name
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  its_product_name:
    name: its_product_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: its_product_name
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  analysis_project_type:
    name: analysis_project_type
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: analysis_project_type
    owner: analysis_project
    domain_of:
    - analysis_project
    - sigs_view
    range: string
    required: false
  img_submission_prority:
    name: img_submission_prority
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: img_submission_prority
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: submission_id
    owner: analysis_project
    domain_of:
    - analysis_project
    range: float
    required: false
  img_taxon_id:
    name: img_taxon_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: img_taxon_id
    owner: analysis_project
    domain_of:
    - analysis_project
    - sigs_view
    range: float
    required: false
  completion_date:
    name: completion_date
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: completion_date
    owner: analysis_project
    domain_of:
    - analysis_project
    - project
    range: datetime
    required: false
  reference_ap_id:
    name: reference_ap_id
    description: Foreign key to analysis_project
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: reference_ap_id
    owner: analysis_project
    domain_of:
    - analysis_project
    range: analysis_project
    required: false
  replaces_ap_id:
    name: replaces_ap_id
    description: Foreign key to analysis_project
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: replaces_ap_id
    owner: analysis_project
    domain_of:
    - analysis_project
    range: analysis_project
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: comments
    owner: analysis_project
    domain_of:
    - analysis_project
    - assembly
    - organism_v2
    range: string
    required: false
  annotator_comments:
    name: annotator_comments
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: annotator_comments
    owner: analysis_project
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - project
    range: string
    required: false
  review_status:
    name: review_status
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: review_status
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  rejection_reasons:
    name: rejection_reasons
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: rejection_reasons
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  pi_id:
    name: pi_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: pi_id
    owner: analysis_project
    domain_of:
    - analysis_project
    - project
    range: float
    required: false
  pi_name:
    name: pi_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: pi_name
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  est_size:
    name: est_size
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: est_size
    owner: analysis_project
    domain_of:
    - analysis_project
    - project
    range: float
    required: false
  scaffold_count:
    name: scaffold_count
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: scaffold_count
    owner: analysis_project
    domain_of:
    - analysis_project
    - ncbi_assembly
    - project
    range: float
    required: false
  contig_count:
    name: contig_count
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: contig_count
    owner: analysis_project
    domain_of:
    - analysis_project
    - ncbi_assembly
    - project
    range: float
    required: false
  gene_count:
    name: gene_count
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gene_count
    owner: analysis_project
    domain_of:
    - analysis_project
    range: float
    required: false
  binning_method:
    name: binning_method
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: binning_method
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  contamination_percentage:
    name: contamination_percentage
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: contamination_percentage
    owner: analysis_project
    domain_of:
    - analysis_project
    range: float
    required: false
  completeness_percentage:
    name: completeness_percentage
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: completeness_percentage
    owner: analysis_project
    domain_of:
    - analysis_project
    range: float
    required: false
  img_bin_count:
    name: img_bin_count
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: img_bin_count
    owner: analysis_project
    domain_of:
    - analysis_project
    range: float
    required: false
  bin_param:
    name: bin_param
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: bin_param
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  reassembly_bin:
    name: reassembly_bin
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: reassembly_bin
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  gene_calling_method:
    name: gene_calling_method
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gene_calling_method
    owner: analysis_project
    domain_of:
    - analysis_project
    - sigs_view
    range: string
    required: false
  sequencing_depth:
    name: sequencing_depth
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: sequencing_depth
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  genbank_low_quality_annotation:
    name: genbank_low_quality_annotation
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: genbank_low_quality_annotation
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  completion:
    name: completion
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: completion
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  pipeline_annotation_method:
    name: pipeline_annotation_method
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: pipeline_annotation_method
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  is_img_annotation:
    name: is_img_annotation
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: is_img_annotation
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  img_annotation_version:
    name: img_annotation_version
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: img_annotation_version
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  specimen:
    name: specimen
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: specimen
    owner: analysis_project
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    range: string
    required: false
  its_annotation_at_id:
    name: its_annotation_at_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: its_annotation_at_id
    owner: analysis_project
    domain_of:
    - analysis_project
    range: float
    required: false
  its_assembly_at_type:
    name: its_assembly_at_type
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: its_assembly_at_type
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  its_ncbi_tax_id:
    name: its_ncbi_tax_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: its_ncbi_tax_id
    owner: analysis_project
    domain_of:
    - analysis_project
    range: float
    required: false
  its_version_number:
    name: its_version_number
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: its_version_number
    owner: analysis_project
    domain_of:
    - analysis_project
    range: float
    required: false
  is_decontamination:
    name: is_decontamination
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: is_decontamination
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  screening_method:
    name: screening_method
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: screening_method
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  decontamination_method:
    name: decontamination_method
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: decontamination_method
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  img_use:
    name: img_use
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: img_use
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  img_rnaseq_id:
    name: img_rnaseq_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: img_rnaseq_id
    owner: analysis_project
    domain_of:
    - analysis_project
    range: float
    required: false
  submission_status_id:
    name: submission_status_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: submission_status_id
    owner: analysis_project
    domain_of:
    - analysis_project
    range: float
    required: false
  submission_status_name:
    name: submission_status_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: submission_status_name
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  submission_comments:
    name: submission_comments
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: submission_comments
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  img_analysis_complete:
    name: img_analysis_complete
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: img_analysis_complete
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  ap_for_nonowner:
    name: ap_for_nonowner
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ap_for_nonowner
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  is_assembled_deleted:
    name: is_assembled_deleted
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: is_assembled_deleted
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  trnas:
    name: trnas
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: trnas
    owner: analysis_project
    domain_of:
    - analysis_project
    range: float
    required: false
  trna_pred_software:
    name: trna_pred_software
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: trna_pred_software
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  sim_search_meth:
    name: sim_search_meth
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: sim_search_meth
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  recover_16s:
    name: recover_16s
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: recover_16s
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  recover_16s_software:
    name: recover_16s_software
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: recover_16s_software
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  compl_appr:
    name: compl_appr
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: compl_appr
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  mag_cov_software:
    name: mag_cov_software
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: mag_cov_software
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  organism_id:
    name: organism_id
    description: Foreign key to organism_v2
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: organism_id
    owner: analysis_project
    domain_of:
    - analysis_project
    - organism_cell_arrangement
    - organism_metabolism
    - organism_v2
    - package_soil
    - project
    range: organism_v2
    required: false
  domain:
    name: domain
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: domain
    owner: analysis_project
    domain_of:
    - analysis_project
    - organism_v2
    - sigs_view
    range: string
    required: false
  gold_phylogeny:
    name: gold_phylogeny
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gold_phylogeny
    owner: analysis_project
    domain_of:
    - analysis_project
    - organism_v2
    range: string
    required: false
  phylogeny_suggestion:
    name: phylogeny_suggestion
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: phylogeny_suggestion
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  genus:
    name: genus
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: genus
    owner: analysis_project
    domain_of:
    - analysis_project
    - organism_v2
    - sigs_view
    range: string
    required: false
  species:
    name: species
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: species
    owner: analysis_project
    domain_of:
    - analysis_project
    - organism_v2
    - sigs_view
    range: string
    required: false
  subspecies:
    name: subspecies
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: subspecies
    owner: analysis_project
    domain_of:
    - analysis_project
    - organism_v2
    range: string
    required: false
  strain:
    name: strain
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: strain
    owner: analysis_project
    domain_of:
    - analysis_project
    - organism_v2
    range: string
    required: false
  serovar:
    name: serovar
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: serovar
    owner: analysis_project
    domain_of:
    - analysis_project
    - organism_v2
    range: string
    required: false
  culture_collection:
    name: culture_collection
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: culture_collection
    owner: analysis_project
    domain_of:
    - analysis_project
    - sigs_view
    range: string
    required: false
  ncbi_tax_id:
    name: ncbi_tax_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ncbi_tax_id
    owner: analysis_project
    domain_of:
    - analysis_project
    - dw_analysis_project
    - ncbi_taxonomy
    range: float
    required: false
  ncbi_superkingdom:
    name: ncbi_superkingdom
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ncbi_superkingdom
    owner: analysis_project
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    range: string
    required: false
  ncbi_kingdom:
    name: ncbi_kingdom
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ncbi_kingdom
    owner: analysis_project
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    range: string
    required: false
  ncbi_phylum:
    name: ncbi_phylum
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ncbi_phylum
    owner: analysis_project
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    range: string
    required: false
  ncbi_class:
    name: ncbi_class
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ncbi_class
    owner: analysis_project
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    - sigs_view
    range: string
    required: false
  ncbi_order:
    name: ncbi_order
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ncbi_order
    owner: analysis_project
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    - sigs_view
    range: string
    required: false
  ncbi_family:
    name: ncbi_family
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ncbi_family
    owner: analysis_project
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    - sigs_view
    range: string
    required: false
  ncbi_genus:
    name: ncbi_genus
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ncbi_genus
    owner: analysis_project
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    range: string
    required: false
  ncbi_species:
    name: ncbi_species
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ncbi_species
    owner: analysis_project
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    range: string
    required: false
  ncbi_biosample_accession:
    name: ncbi_biosample_accession
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ncbi_biosample_accession
    owner: analysis_project
    domain_of:
    - analysis_project
    - project
    range: string
    required: false
  ncbi_bioproject_accession:
    name: ncbi_bioproject_accession
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ncbi_bioproject_accession
    owner: analysis_project
    domain_of:
    - analysis_project
    - project
    - sigs_view
    range: string
    required: false
  ncbi_bioproject_id:
    name: ncbi_bioproject_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ncbi_bioproject_id
    owner: analysis_project
    domain_of:
    - analysis_project
    - project
    range: float
    required: false
  ncbi_taxonomy_lineage:
    name: ncbi_taxonomy_lineage
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ncbi_taxonomy_lineage
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  study_id:
    name: study_id
    description: Foreign key to study
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: study_id
    owner: analysis_project
    domain_of:
    - analysis_project
    - study
    range: study
    required: false
  ecosystem_path_id:
    name: ecosystem_path_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ecosystem_path_id
    owner: analysis_project
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - study
    range: float
    required: false
  ecosystem:
    name: ecosystem
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ecosystem
    owner: analysis_project
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - sigs_view
    - study
    range: string
    required: false
  ecosystem_category:
    name: ecosystem_category
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ecosystem_category
    owner: analysis_project
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - sigs_view
    - study
    range: string
    required: false
  ecosystem_type:
    name: ecosystem_type
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ecosystem_type
    owner: analysis_project
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - study
    range: string
    required: false
  ecosystem_subtype:
    name: ecosystem_subtype
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: ecosystem_subtype
    owner: analysis_project
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - study
    range: string
    required: false
  specific_ecosystem:
    name: specific_ecosystem
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: specific_ecosystem
    owner: analysis_project
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - study
    range: string
    required: false
  img_predicted_viral_contigs:
    name: img_predicted_viral_contigs
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: img_predicted_viral_contigs
    owner: analysis_project
    domain_of:
    - analysis_project
    range: float
    required: false
  its_data_utilization_status:
    name: its_data_utilization_status
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: its_data_utilization_status
    owner: analysis_project
    domain_of:
    - analysis_project
    - project
    range: string
    required: false
  analysis_system:
    name: analysis_system
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: analysis_system
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  suggest_img_annotation_version:
    name: suggest_img_annotation_version
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: suggest_img_annotation_version
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_version_id:
    name: gtdb_version_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gtdb_version_id
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_taxonomy_lineage:
    name: gtdb_taxonomy_lineage
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gtdb_taxonomy_lineage
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_superkingdom:
    name: gtdb_superkingdom
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gtdb_superkingdom
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_phylum:
    name: gtdb_phylum
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gtdb_phylum
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_class:
    name: gtdb_class
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gtdb_class
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_order:
    name: gtdb_order
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gtdb_order
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_family:
    name: gtdb_family
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gtdb_family
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_genus:
    name: gtdb_genus
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gtdb_genus
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  gtdb_species:
    name: gtdb_species
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gtdb_species
    owner: analysis_project
    domain_of:
    - analysis_project
    range: string
    required: false
  is_test:
    name: is_test
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: is_test
    owner: analysis_project
    domain_of:
    - analysis_project
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - project
    - sra_experiment_v2
    - sra_sample_v2
    - study
    range: string
    required: false
  img_predicted_plasmid_contigs:
    name: img_predicted_plasmid_contigs
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: img_predicted_plasmid_contigs
    owner: analysis_project
    domain_of:
    - analysis_project
    range: float
    required: false