Class: Assembly

URI: gold:Assembly

classDiagram class Assembly click Assembly href "../Assembly/" Assembly : analysis_project_id Assembly --> "0..1" AnalysisProject : analysis_project_id click AnalysisProject href "../AnalysisProject/" Assembly : analyst_name Assembly : assembly_id Assembly : assembly_type Assembly : comments Assembly : dir_num Assembly : genome_type Assembly : library_name Assembly : method Assembly --> "0..1" AssemblyMethod : method click AssemblyMethod href "../AssemblyMethod/" Assembly : method_generated Assembly : name Assembly : organism_name Assembly : qc_report_location Assembly : release_date Assembly : rqc_assembly_id

Slots

Name	Cardinality and Range	Description	Inheritance
assembly_id	0..1 Float		direct
organism_name	0..1 String		direct
library_name	0..1 String		direct
genome_type	0..1 String		direct
assembly_type	0..1 String		direct
analyst_name	0..1 String		direct
release_date	0..1 Datetime		direct
comments	0..1 String		direct
dir_num	0..1 Float		direct
rqc_assembly_id	0..1 Float		direct
qc_report_location	0..1 String		direct
analysis_project_id	0..1 AnalysisProject	Foreign key to analysis_project	direct
method	0..1 AssemblyMethod	Foreign key to assembly_method	direct
name	0..1 String		direct
method_generated	0..1 String		direct

Usages

used by	used in	type	used
AssemblyLibrary	assembly_id	range	Assembly

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/gold

Mappings

Mapping Type	Mapped Value
self	gold:Assembly
native	gold:Assembly

LinkML Source

Direct

name: assembly
from_schema: https://w3id.org/jgi/gold
attributes:
  assembly_id:
    name: assembly_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - assembly
    - assembly_library
    range: float
    required: false
  organism_name:
    name: organism_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - assembly
    - ncbi_assembly
    - organism_v2
    range: string
    required: false
  library_name:
    name: library_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - assembly
    - sra_experiment_v2
    range: string
    required: false
  genome_type:
    name: genome_type
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - assembly
    range: string
    required: false
  assembly_type:
    name: assembly_type
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - assembly
    - ncbi_assembly
    range: string
    required: false
  analyst_name:
    name: analyst_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - assembly
    range: string
    required: false
  release_date:
    name: release_date
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - assembly
    - sigs_view
    range: datetime
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - assembly
    - organism_v2
    range: string
    required: false
  dir_num:
    name: dir_num
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - assembly
    range: float
    required: false
  rqc_assembly_id:
    name: rqc_assembly_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - assembly
    range: float
    required: false
  qc_report_location:
    name: qc_report_location
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - assembly
    range: string
    required: false
  analysis_project_id:
    name: analysis_project_id
    description: Foreign key to analysis_project
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - analysis_project_publication
    - analysis_project_sra_run_v2
    - assembly
    - dw_analysis_project
    - project_analysis_project
    - sigs_view
    range: analysis_project
    required: false
  method:
    name: method
    description: Foreign key to assembly_method
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - assembly
    range: assembly_method
    required: false
  name:
    name: name
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - api_user
    - assembly
    - assembly_method
    - ror
    range: string
    required: false
  method_generated:
    name: method_generated
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - assembly
    range: string
    required: false

Induced

name: assembly
from_schema: https://w3id.org/jgi/gold
attributes:
  assembly_id:
    name: assembly_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: assembly_id
    owner: assembly
    domain_of:
    - assembly
    - assembly_library
    range: float
    required: false
  organism_name:
    name: organism_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: organism_name
    owner: assembly
    domain_of:
    - assembly
    - ncbi_assembly
    - organism_v2
    range: string
    required: false
  library_name:
    name: library_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: library_name
    owner: assembly
    domain_of:
    - assembly
    - sra_experiment_v2
    range: string
    required: false
  genome_type:
    name: genome_type
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: genome_type
    owner: assembly
    domain_of:
    - assembly
    range: string
    required: false
  assembly_type:
    name: assembly_type
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: assembly_type
    owner: assembly
    domain_of:
    - assembly
    - ncbi_assembly
    range: string
    required: false
  analyst_name:
    name: analyst_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: analyst_name
    owner: assembly
    domain_of:
    - assembly
    range: string
    required: false
  release_date:
    name: release_date
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: release_date
    owner: assembly
    domain_of:
    - assembly
    - sigs_view
    range: datetime
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/gold
    alias: comments
    owner: assembly
    domain_of:
    - analysis_project
    - assembly
    - organism_v2
    range: string
    required: false
  dir_num:
    name: dir_num
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: dir_num
    owner: assembly
    domain_of:
    - assembly
    range: float
    required: false
  rqc_assembly_id:
    name: rqc_assembly_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: rqc_assembly_id
    owner: assembly
    domain_of:
    - assembly
    range: float
    required: false
  qc_report_location:
    name: qc_report_location
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: qc_report_location
    owner: assembly
    domain_of:
    - assembly
    range: string
    required: false
  analysis_project_id:
    name: analysis_project_id
    description: Foreign key to analysis_project
    from_schema: https://w3id.org/jgi/gold
    alias: analysis_project_id
    owner: assembly
    domain_of:
    - analysis_project
    - analysis_project_publication
    - analysis_project_sra_run_v2
    - assembly
    - dw_analysis_project
    - project_analysis_project
    - sigs_view
    range: analysis_project
    required: false
  method:
    name: method
    description: Foreign key to assembly_method
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: method
    owner: assembly
    domain_of:
    - assembly
    range: assembly_method
    required: false
  name:
    name: name
    from_schema: https://w3id.org/jgi/gold
    alias: name
    owner: assembly
    domain_of:
    - api_user
    - assembly
    - assembly_method
    - ror
    range: string
    required: false
  method_generated:
    name: method_generated
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: method_generated
    owner: assembly
    domain_of:
    - assembly
    range: string
    required: false