Class: NcbiRawSraRun

URI: gold:NcbiRawSraRun

classDiagram class NcbiRawSraRun click NcbiRawSraRun href "../NcbiRawSraRun/" NcbiRawSraRun : alias NcbiRawSraRun : description NcbiRawSraRun : external_id NcbiRawSraRun : is_public NcbiRawSraRun : is_test NcbiRawSraRun : mod_date NcbiRawSraRun : publication_date NcbiRawSraRun : run_bases NcbiRawSraRun : run_size NcbiRawSraRun : run_spots NcbiRawSraRun : sra_experiment_id NcbiRawSraRun : sra_id NcbiRawSraRun : title NcbiRawSraRun : xml_body

Slots

Name	Cardinality and Range	Inheritance
sra_id	0..1 String	direct
title	0..1 String	direct
external_id	0..1 String	direct
mod_date	0..1 Datetime	direct
alias	0..1 String	direct
description	0..1 String	direct
xml_body	0..1 String	direct
sra_experiment_id	0..1 String	direct
run_spots	0..1 Float	direct
run_bases	0..1 Float	direct
run_size	0..1 Float	direct
publication_date	0..1 Datetime	direct
is_test	0..1 String	direct
is_public	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/gold

Mappings

Mapping Type	Mapped Value
self	gold:NcbiRawSraRun
native	gold:NcbiRawSraRun

LinkML Source

Direct

name: ncbi_raw_sra_run
from_schema: https://w3id.org/jgi/gold
attributes:
  sra_id:
    name: sra_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - ncbi_raw_sra_run
    range: string
    required: false
  title:
    name: title
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - excel
    - ncbi_raw_sra_run
    - sra_experiment_v2
    - sra_sample_v2
    range: string
    required: false
  external_id:
    name: external_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - ncbi_raw_sra_run
    range: string
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - api_user
    - bacdive
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - package_soil
    - project
    - study
    range: datetime
    required: false
  alias:
    name: alias
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - ncbi_raw_sra_run
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - dw_sequencing_product
    - ncbi_raw_sra_run
    - project
    - sra_experiment_v2
    - study
    range: string
    required: false
  xml_body:
    name: xml_body
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - ncbi_raw_sra_run
    range: string
    required: false
  sra_experiment_id:
    name: sra_experiment_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - ncbi_raw_sra_run
    - sra_experiment_v2
    range: string
    required: false
  run_spots:
    name: run_spots
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - ncbi_raw_sra_run
    range: float
    required: false
  run_bases:
    name: run_bases
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - ncbi_raw_sra_run
    range: float
    required: false
  run_size:
    name: run_size
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - ncbi_raw_sra_run
    range: float
    required: false
  publication_date:
    name: publication_date
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - ncbi_raw_sra_run
    range: datetime
    required: false
  is_test:
    name: is_test
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - project
    - sra_experiment_v2
    - sra_sample_v2
    - study
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - project
    - sra_experiment_v2
    - sra_sample_v2
    - study
    range: string
    required: false

Induced

name: ncbi_raw_sra_run
from_schema: https://w3id.org/jgi/gold
attributes:
  sra_id:
    name: sra_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: sra_id
    owner: ncbi_raw_sra_run
    domain_of:
    - ncbi_raw_sra_run
    range: string
    required: false
  title:
    name: title
    from_schema: https://w3id.org/jgi/gold
    alias: title
    owner: ncbi_raw_sra_run
    domain_of:
    - excel
    - ncbi_raw_sra_run
    - sra_experiment_v2
    - sra_sample_v2
    range: string
    required: false
  external_id:
    name: external_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: external_id
    owner: ncbi_raw_sra_run
    domain_of:
    - ncbi_raw_sra_run
    range: string
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/gold
    alias: mod_date
    owner: ncbi_raw_sra_run
    domain_of:
    - analysis_project
    - api_user
    - bacdive
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - package_soil
    - project
    - study
    range: datetime
    required: false
  alias:
    name: alias
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: alias
    owner: ncbi_raw_sra_run
    domain_of:
    - ncbi_raw_sra_run
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/gold
    alias: description
    owner: ncbi_raw_sra_run
    domain_of:
    - biosample
    - dw_sequencing_product
    - ncbi_raw_sra_run
    - project
    - sra_experiment_v2
    - study
    range: string
    required: false
  xml_body:
    name: xml_body
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: xml_body
    owner: ncbi_raw_sra_run
    domain_of:
    - ncbi_raw_sra_run
    range: string
    required: false
  sra_experiment_id:
    name: sra_experiment_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: sra_experiment_id
    owner: ncbi_raw_sra_run
    domain_of:
    - ncbi_raw_sra_run
    - sra_experiment_v2
    range: string
    required: false
  run_spots:
    name: run_spots
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: run_spots
    owner: ncbi_raw_sra_run
    domain_of:
    - ncbi_raw_sra_run
    range: float
    required: false
  run_bases:
    name: run_bases
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: run_bases
    owner: ncbi_raw_sra_run
    domain_of:
    - ncbi_raw_sra_run
    range: float
    required: false
  run_size:
    name: run_size
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: run_size
    owner: ncbi_raw_sra_run
    domain_of:
    - ncbi_raw_sra_run
    range: float
    required: false
  publication_date:
    name: publication_date
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: publication_date
    owner: ncbi_raw_sra_run
    domain_of:
    - ncbi_raw_sra_run
    range: datetime
    required: false
  is_test:
    name: is_test
    from_schema: https://w3id.org/jgi/gold
    alias: is_test
    owner: ncbi_raw_sra_run
    domain_of:
    - analysis_project
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - project
    - sra_experiment_v2
    - sra_sample_v2
    - study
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/gold
    alias: is_public
    owner: ncbi_raw_sra_run
    domain_of:
    - analysis_project
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - project
    - sra_experiment_v2
    - sra_sample_v2
    - study
    range: string
    required: false