Class: NcbiTaxonomy
URI: gold:NcbiTaxonomy
classDiagram
class NcbiTaxonomy
click NcbiTaxonomy href "../NcbiTaxonomy/"
NcbiTaxonomy : deleted
NcbiTaxonomy : lineage
NcbiTaxonomy : lineage_with_ranks
NcbiTaxonomy : ncbi_class
NcbiTaxonomy : ncbi_family
NcbiTaxonomy : ncbi_genus
NcbiTaxonomy : ncbi_kingdom
NcbiTaxonomy : ncbi_order
NcbiTaxonomy : ncbi_phylum
NcbiTaxonomy : ncbi_species
NcbiTaxonomy : ncbi_superkingdom
NcbiTaxonomy : ncbi_tax_id
NcbiTaxonomy : parent_ncbi_tax_id
NcbiTaxonomy : rank
NcbiTaxonomy : replacement_ncbi_tax_id
NcbiTaxonomy : scientific_name
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| ncbi_tax_id | 0..1 Float |
direct | |
| parent_ncbi_tax_id | 0..1 Float |
direct | |
| ncbi_superkingdom | 0..1 String |
direct | |
| ncbi_kingdom | 0..1 String |
direct | |
| ncbi_phylum | 0..1 String |
direct | |
| ncbi_class | 0..1 String |
direct | |
| ncbi_order | 0..1 String |
direct | |
| ncbi_family | 0..1 String |
direct | |
| ncbi_genus | 0..1 String |
direct | |
| ncbi_species | 0..1 String |
direct | |
| scientific_name | 0..1 String |
direct | |
| rank | 0..1 String |
direct | |
| replacement_ncbi_tax_id | 0..1 Float |
direct | |
| deleted | 0..1 String |
direct | |
| lineage | 0..1 String |
direct | |
| lineage_with_ranks | 0..1 String |
direct |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/jgi/gold
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | gold:NcbiTaxonomy |
| native | gold:NcbiTaxonomy |
LinkML Source
Direct
name: ncbi_taxonomy
from_schema: https://w3id.org/jgi/gold
attributes:
ncbi_tax_id:
name: ncbi_tax_id
from_schema: https://w3id.org/jgi/gold
domain_of:
- analysis_project
- dw_analysis_project
- ncbi_taxonomy
range: float
required: false
parent_ncbi_tax_id:
name: parent_ncbi_tax_id
from_schema: https://w3id.org/jgi/gold
rank: 1000
domain_of:
- ncbi_taxonomy
range: float
required: false
ncbi_superkingdom:
name: ncbi_superkingdom
from_schema: https://w3id.org/jgi/gold
domain_of:
- analysis_project
- ncbi_taxonomy
- organism_v2
range: string
required: false
ncbi_kingdom:
name: ncbi_kingdom
from_schema: https://w3id.org/jgi/gold
domain_of:
- analysis_project
- ncbi_taxonomy
- organism_v2
range: string
required: false
ncbi_phylum:
name: ncbi_phylum
from_schema: https://w3id.org/jgi/gold
domain_of:
- analysis_project
- ncbi_taxonomy
- organism_v2
range: string
required: false
ncbi_class:
name: ncbi_class
from_schema: https://w3id.org/jgi/gold
domain_of:
- analysis_project
- ncbi_taxonomy
- organism_v2
- sigs_view
range: string
required: false
ncbi_order:
name: ncbi_order
from_schema: https://w3id.org/jgi/gold
domain_of:
- analysis_project
- ncbi_taxonomy
- organism_v2
- sigs_view
range: string
required: false
ncbi_family:
name: ncbi_family
from_schema: https://w3id.org/jgi/gold
domain_of:
- analysis_project
- ncbi_taxonomy
- organism_v2
- sigs_view
range: string
required: false
ncbi_genus:
name: ncbi_genus
from_schema: https://w3id.org/jgi/gold
domain_of:
- analysis_project
- ncbi_taxonomy
- organism_v2
range: string
required: false
ncbi_species:
name: ncbi_species
from_schema: https://w3id.org/jgi/gold
domain_of:
- analysis_project
- ncbi_taxonomy
- organism_v2
range: string
required: false
scientific_name:
name: scientific_name
from_schema: https://w3id.org/jgi/gold
rank: 1000
domain_of:
- ncbi_taxonomy
range: string
required: false
rank:
name: rank
from_schema: https://w3id.org/jgi/gold
rank: 1000
domain_of:
- ncbi_taxonomy
range: string
required: false
replacement_ncbi_tax_id:
name: replacement_ncbi_tax_id
from_schema: https://w3id.org/jgi/gold
rank: 1000
domain_of:
- ncbi_taxonomy
range: float
required: false
deleted:
name: deleted
from_schema: https://w3id.org/jgi/gold
rank: 1000
domain_of:
- ncbi_taxonomy
range: string
required: false
lineage:
name: lineage
from_schema: https://w3id.org/jgi/gold
rank: 1000
domain_of:
- ncbi_taxonomy
range: string
required: false
lineage_with_ranks:
name: lineage_with_ranks
from_schema: https://w3id.org/jgi/gold
rank: 1000
domain_of:
- ncbi_taxonomy
range: string
required: false
Induced
name: ncbi_taxonomy
from_schema: https://w3id.org/jgi/gold
attributes:
ncbi_tax_id:
name: ncbi_tax_id
from_schema: https://w3id.org/jgi/gold
alias: ncbi_tax_id
owner: ncbi_taxonomy
domain_of:
- analysis_project
- dw_analysis_project
- ncbi_taxonomy
range: float
required: false
parent_ncbi_tax_id:
name: parent_ncbi_tax_id
from_schema: https://w3id.org/jgi/gold
rank: 1000
alias: parent_ncbi_tax_id
owner: ncbi_taxonomy
domain_of:
- ncbi_taxonomy
range: float
required: false
ncbi_superkingdom:
name: ncbi_superkingdom
from_schema: https://w3id.org/jgi/gold
alias: ncbi_superkingdom
owner: ncbi_taxonomy
domain_of:
- analysis_project
- ncbi_taxonomy
- organism_v2
range: string
required: false
ncbi_kingdom:
name: ncbi_kingdom
from_schema: https://w3id.org/jgi/gold
alias: ncbi_kingdom
owner: ncbi_taxonomy
domain_of:
- analysis_project
- ncbi_taxonomy
- organism_v2
range: string
required: false
ncbi_phylum:
name: ncbi_phylum
from_schema: https://w3id.org/jgi/gold
alias: ncbi_phylum
owner: ncbi_taxonomy
domain_of:
- analysis_project
- ncbi_taxonomy
- organism_v2
range: string
required: false
ncbi_class:
name: ncbi_class
from_schema: https://w3id.org/jgi/gold
alias: ncbi_class
owner: ncbi_taxonomy
domain_of:
- analysis_project
- ncbi_taxonomy
- organism_v2
- sigs_view
range: string
required: false
ncbi_order:
name: ncbi_order
from_schema: https://w3id.org/jgi/gold
alias: ncbi_order
owner: ncbi_taxonomy
domain_of:
- analysis_project
- ncbi_taxonomy
- organism_v2
- sigs_view
range: string
required: false
ncbi_family:
name: ncbi_family
from_schema: https://w3id.org/jgi/gold
alias: ncbi_family
owner: ncbi_taxonomy
domain_of:
- analysis_project
- ncbi_taxonomy
- organism_v2
- sigs_view
range: string
required: false
ncbi_genus:
name: ncbi_genus
from_schema: https://w3id.org/jgi/gold
alias: ncbi_genus
owner: ncbi_taxonomy
domain_of:
- analysis_project
- ncbi_taxonomy
- organism_v2
range: string
required: false
ncbi_species:
name: ncbi_species
from_schema: https://w3id.org/jgi/gold
alias: ncbi_species
owner: ncbi_taxonomy
domain_of:
- analysis_project
- ncbi_taxonomy
- organism_v2
range: string
required: false
scientific_name:
name: scientific_name
from_schema: https://w3id.org/jgi/gold
rank: 1000
alias: scientific_name
owner: ncbi_taxonomy
domain_of:
- ncbi_taxonomy
range: string
required: false
rank:
name: rank
from_schema: https://w3id.org/jgi/gold
rank: 1000
alias: rank
owner: ncbi_taxonomy
domain_of:
- ncbi_taxonomy
range: string
required: false
replacement_ncbi_tax_id:
name: replacement_ncbi_tax_id
from_schema: https://w3id.org/jgi/gold
rank: 1000
alias: replacement_ncbi_tax_id
owner: ncbi_taxonomy
domain_of:
- ncbi_taxonomy
range: float
required: false
deleted:
name: deleted
from_schema: https://w3id.org/jgi/gold
rank: 1000
alias: deleted
owner: ncbi_taxonomy
domain_of:
- ncbi_taxonomy
range: string
required: false
lineage:
name: lineage
from_schema: https://w3id.org/jgi/gold
rank: 1000
alias: lineage
owner: ncbi_taxonomy
domain_of:
- ncbi_taxonomy
range: string
required: false
lineage_with_ranks:
name: lineage_with_ranks
from_schema: https://w3id.org/jgi/gold
rank: 1000
alias: lineage_with_ranks
owner: ncbi_taxonomy
domain_of:
- ncbi_taxonomy
range: string
required: false