Class: SigsView

URI: gold:SigsView

classDiagram class SigsView click SigsView href "../SigsView/" SigsView : altitude SigsView : analysis_project_id SigsView : analysis_project_type SigsView : assemblers SigsView : biotic_relationship SigsView : carbon_source SigsView : cell_shape SigsView : collection_date SigsView : culture_collection SigsView : depth SigsView : diseases SigsView : domain SigsView : ecosystem SigsView : ecosystem_category SigsView : feature SigsView : finishing_quality SigsView : fold_coverage SigsView : genbank_id SigsView : gene_calling_method SigsView : genus SigsView : geo_location SigsView : gold_analysis_project_id SigsView : gold_biosample_id SigsView : gold_sequencing_project_id SigsView : gold_study_id SigsView : gram_stain SigsView : habitat SigsView : img_taxon_id SigsView : latitude SigsView : libraries SigsView : locus_tag SigsView : longitude SigsView : material SigsView : motility SigsView : ncbi_bioproject_accession SigsView : ncbi_class SigsView : ncbi_family SigsView : ncbi_order SigsView : oxygen_requirement SigsView : ph SigsView : phylum SigsView : release_date SigsView : relevance SigsView : salinity SigsView : sequencing_platforms SigsView : species SigsView : sporulation SigsView : sra_srx_accession SigsView : temperature_range SigsView : type_strain

Slots

Name	Cardinality and Range	Inheritance
analysis_project_id	0..1 Float	direct
analysis_project_type	0..1 String	direct
gold_study_id	0..1 String	direct
gold_sequencing_project_id	0..1 String	direct
gold_analysis_project_id	0..1 String	direct
gold_biosample_id	0..1 String	direct
img_taxon_id	0..1 Float	direct
sra_srx_accession	0..1 String	direct
ncbi_bioproject_accession	0..1 String	direct
altitude	0..1 Float	direct
depth	0..1 Float	direct
ecosystem	0..1 String	direct
ecosystem_category	0..1 String	direct
latitude	0..1 Float	direct
longitude	0..1 Float	direct
geo_location	0..1 String	direct
feature	0..1 String	direct
collection_date	0..1 String	direct
relevance	0..1 String	direct
material	0..1 String	direct
domain	0..1 String	direct
phylum	0..1 String	direct
ncbi_class	0..1 String	direct
ncbi_order	0..1 String	direct
ncbi_family	0..1 String	direct
genus	0..1 String	direct
species	0..1 String	direct
gram_stain	0..1 String	direct
cell_shape	0..1 String	direct
motility	0..1 String	direct
sporulation	0..1 String	direct
temperature_range	0..1 String	direct
ph	0..1 String	direct
carbon_source	0..1 String	direct
habitat	0..1 String	direct
salinity	0..1 String	direct
biotic_relationship	0..1 String	direct
oxygen_requirement	0..1 String	direct
libraries	0..1 String	direct
finishing_quality	0..1 String	direct
sequencing_platforms	0..1 String	direct
fold_coverage	0..1 String	direct
gene_calling_method	0..1 String	direct
assemblers	0..1 String	direct
locus_tag	0..1 String	direct
genbank_id	0..1 String	direct
release_date	0..1 Datetime	direct
culture_collection	0..1 String	direct
type_strain	0..1 String	direct
diseases	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/gold

Mappings

Mapping Type	Mapped Value
self	gold:SigsView
native	gold:SigsView

LinkML Source

Direct

name: sigs_view
from_schema: https://w3id.org/jgi/gold
attributes:
  analysis_project_id:
    name: analysis_project_id
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - analysis_project_publication
    - analysis_project_sra_run_v2
    - assembly
    - dw_analysis_project
    - project_analysis_project
    - sigs_view
    range: float
    required: false
  analysis_project_type:
    name: analysis_project_type
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - sigs_view
    range: string
    required: false
  gold_study_id:
    name: gold_study_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  gold_sequencing_project_id:
    name: gold_sequencing_project_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  gold_analysis_project_id:
    name: gold_analysis_project_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  gold_biosample_id:
    name: gold_biosample_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  img_taxon_id:
    name: img_taxon_id
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - sigs_view
    range: float
    required: false
  sra_srx_accession:
    name: sra_srx_accession
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - project
    - sigs_view
    range: string
    required: false
  ncbi_bioproject_accession:
    name: ncbi_bioproject_accession
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - project
    - sigs_view
    range: string
    required: false
  altitude:
    name: altitude
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - organism_v2
    - sigs_view
    range: float
    required: false
  depth:
    name: depth
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - organism_v2
    - sigs_view
    range: float
    required: false
  ecosystem:
    name: ecosystem
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - sigs_view
    - study
    range: string
    required: false
  ecosystem_category:
    name: ecosystem_category
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - sigs_view
    - study
    range: string
    required: false
  latitude:
    name: latitude
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - organism_v2
    - sigs_view
    range: float
    required: false
  longitude:
    name: longitude
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - organism_v2
    - sigs_view
    range: float
    required: false
  geo_location:
    name: geo_location
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  feature:
    name: feature
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  collection_date:
    name: collection_date
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  relevance:
    name: relevance
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  material:
    name: material
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  domain:
    name: domain
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - organism_v2
    - sigs_view
    range: string
    required: false
  phylum:
    name: phylum
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  ncbi_class:
    name: ncbi_class
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    - sigs_view
    range: string
    required: false
  ncbi_order:
    name: ncbi_order
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    - sigs_view
    range: string
    required: false
  ncbi_family:
    name: ncbi_family
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    - sigs_view
    range: string
    required: false
  genus:
    name: genus
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - organism_v2
    - sigs_view
    range: string
    required: false
  species:
    name: species
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - organism_v2
    - sigs_view
    range: string
    required: false
  gram_stain:
    name: gram_stain
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - organism_v2
    - sigs_view
    range: string
    required: false
  cell_shape:
    name: cell_shape
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - organism_v2
    - sigs_view
    range: string
    required: false
  motility:
    name: motility
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - organism_v2
    - sigs_view
    range: string
    required: false
  sporulation:
    name: sporulation
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - organism_v2
    - sigs_view
    range: string
    required: false
  temperature_range:
    name: temperature_range
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - organism_v2
    - sigs_view
    range: string
    required: false
  ph:
    name: ph
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - organism_v2
    - sigs_view
    range: string
    required: false
  carbon_source:
    name: carbon_source
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - organism_v2
    - sigs_view
    range: string
    required: false
  habitat:
    name: habitat
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - sigs_view
    range: string
    required: false
  salinity:
    name: salinity
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - organism_v2
    - sigs_view
    range: string
    required: false
  biotic_relationship:
    name: biotic_relationship
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  oxygen_requirement:
    name: oxygen_requirement
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - organism_v2
    - sigs_view
    range: string
    required: false
  libraries:
    name: libraries
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  finishing_quality:
    name: finishing_quality
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  sequencing_platforms:
    name: sequencing_platforms
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  fold_coverage:
    name: fold_coverage
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  gene_calling_method:
    name: gene_calling_method
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - sigs_view
    range: string
    required: false
  assemblers:
    name: assemblers
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  locus_tag:
    name: locus_tag
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false
  genbank_id:
    name: genbank_id
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - ncbi_genbank
    - sigs_view
    range: string
    required: false
  release_date:
    name: release_date
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - assembly
    - sigs_view
    range: datetime
    required: false
  culture_collection:
    name: culture_collection
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - sigs_view
    range: string
    required: false
  type_strain:
    name: type_strain
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - organism_v2
    - sigs_view
    range: string
    required: false
  diseases:
    name: diseases
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sigs_view
    range: string
    required: false

Induced

name: sigs_view
from_schema: https://w3id.org/jgi/gold
attributes:
  analysis_project_id:
    name: analysis_project_id
    from_schema: https://w3id.org/jgi/gold
    alias: analysis_project_id
    owner: sigs_view
    domain_of:
    - analysis_project
    - analysis_project_publication
    - analysis_project_sra_run_v2
    - assembly
    - dw_analysis_project
    - project_analysis_project
    - sigs_view
    range: float
    required: false
  analysis_project_type:
    name: analysis_project_type
    from_schema: https://w3id.org/jgi/gold
    alias: analysis_project_type
    owner: sigs_view
    domain_of:
    - analysis_project
    - sigs_view
    range: string
    required: false
  gold_study_id:
    name: gold_study_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gold_study_id
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  gold_sequencing_project_id:
    name: gold_sequencing_project_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gold_sequencing_project_id
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  gold_analysis_project_id:
    name: gold_analysis_project_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gold_analysis_project_id
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  gold_biosample_id:
    name: gold_biosample_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gold_biosample_id
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  img_taxon_id:
    name: img_taxon_id
    from_schema: https://w3id.org/jgi/gold
    alias: img_taxon_id
    owner: sigs_view
    domain_of:
    - analysis_project
    - sigs_view
    range: float
    required: false
  sra_srx_accession:
    name: sra_srx_accession
    from_schema: https://w3id.org/jgi/gold
    alias: sra_srx_accession
    owner: sigs_view
    domain_of:
    - project
    - sigs_view
    range: string
    required: false
  ncbi_bioproject_accession:
    name: ncbi_bioproject_accession
    from_schema: https://w3id.org/jgi/gold
    alias: ncbi_bioproject_accession
    owner: sigs_view
    domain_of:
    - analysis_project
    - project
    - sigs_view
    range: string
    required: false
  altitude:
    name: altitude
    from_schema: https://w3id.org/jgi/gold
    alias: altitude
    owner: sigs_view
    domain_of:
    - biosample
    - organism_v2
    - sigs_view
    range: float
    required: false
  depth:
    name: depth
    from_schema: https://w3id.org/jgi/gold
    alias: depth
    owner: sigs_view
    domain_of:
    - biosample
    - organism_v2
    - sigs_view
    range: float
    required: false
  ecosystem:
    name: ecosystem
    from_schema: https://w3id.org/jgi/gold
    alias: ecosystem
    owner: sigs_view
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - sigs_view
    - study
    range: string
    required: false
  ecosystem_category:
    name: ecosystem_category
    from_schema: https://w3id.org/jgi/gold
    alias: ecosystem_category
    owner: sigs_view
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - sigs_view
    - study
    range: string
    required: false
  latitude:
    name: latitude
    from_schema: https://w3id.org/jgi/gold
    alias: latitude
    owner: sigs_view
    domain_of:
    - biosample
    - organism_v2
    - sigs_view
    range: float
    required: false
  longitude:
    name: longitude
    from_schema: https://w3id.org/jgi/gold
    alias: longitude
    owner: sigs_view
    domain_of:
    - biosample
    - organism_v2
    - sigs_view
    range: float
    required: false
  geo_location:
    name: geo_location
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: geo_location
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  feature:
    name: feature
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: feature
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  collection_date:
    name: collection_date
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: collection_date
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  relevance:
    name: relevance
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: relevance
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  material:
    name: material
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: material
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  domain:
    name: domain
    from_schema: https://w3id.org/jgi/gold
    alias: domain
    owner: sigs_view
    domain_of:
    - analysis_project
    - organism_v2
    - sigs_view
    range: string
    required: false
  phylum:
    name: phylum
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: phylum
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  ncbi_class:
    name: ncbi_class
    from_schema: https://w3id.org/jgi/gold
    alias: ncbi_class
    owner: sigs_view
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    - sigs_view
    range: string
    required: false
  ncbi_order:
    name: ncbi_order
    from_schema: https://w3id.org/jgi/gold
    alias: ncbi_order
    owner: sigs_view
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    - sigs_view
    range: string
    required: false
  ncbi_family:
    name: ncbi_family
    from_schema: https://w3id.org/jgi/gold
    alias: ncbi_family
    owner: sigs_view
    domain_of:
    - analysis_project
    - ncbi_taxonomy
    - organism_v2
    - sigs_view
    range: string
    required: false
  genus:
    name: genus
    from_schema: https://w3id.org/jgi/gold
    alias: genus
    owner: sigs_view
    domain_of:
    - analysis_project
    - organism_v2
    - sigs_view
    range: string
    required: false
  species:
    name: species
    from_schema: https://w3id.org/jgi/gold
    alias: species
    owner: sigs_view
    domain_of:
    - analysis_project
    - organism_v2
    - sigs_view
    range: string
    required: false
  gram_stain:
    name: gram_stain
    from_schema: https://w3id.org/jgi/gold
    alias: gram_stain
    owner: sigs_view
    domain_of:
    - organism_v2
    - sigs_view
    range: string
    required: false
  cell_shape:
    name: cell_shape
    from_schema: https://w3id.org/jgi/gold
    alias: cell_shape
    owner: sigs_view
    domain_of:
    - organism_v2
    - sigs_view
    range: string
    required: false
  motility:
    name: motility
    from_schema: https://w3id.org/jgi/gold
    alias: motility
    owner: sigs_view
    domain_of:
    - organism_v2
    - sigs_view
    range: string
    required: false
  sporulation:
    name: sporulation
    from_schema: https://w3id.org/jgi/gold
    alias: sporulation
    owner: sigs_view
    domain_of:
    - organism_v2
    - sigs_view
    range: string
    required: false
  temperature_range:
    name: temperature_range
    from_schema: https://w3id.org/jgi/gold
    alias: temperature_range
    owner: sigs_view
    domain_of:
    - organism_v2
    - sigs_view
    range: string
    required: false
  ph:
    name: ph
    from_schema: https://w3id.org/jgi/gold
    alias: ph
    owner: sigs_view
    domain_of:
    - biosample
    - organism_v2
    - sigs_view
    range: string
    required: false
  carbon_source:
    name: carbon_source
    from_schema: https://w3id.org/jgi/gold
    alias: carbon_source
    owner: sigs_view
    domain_of:
    - organism_v2
    - sigs_view
    range: string
    required: false
  habitat:
    name: habitat
    from_schema: https://w3id.org/jgi/gold
    alias: habitat
    owner: sigs_view
    domain_of:
    - biosample
    - sigs_view
    range: string
    required: false
  salinity:
    name: salinity
    from_schema: https://w3id.org/jgi/gold
    alias: salinity
    owner: sigs_view
    domain_of:
    - biosample
    - organism_v2
    - sigs_view
    range: string
    required: false
  biotic_relationship:
    name: biotic_relationship
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: biotic_relationship
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  oxygen_requirement:
    name: oxygen_requirement
    from_schema: https://w3id.org/jgi/gold
    alias: oxygen_requirement
    owner: sigs_view
    domain_of:
    - organism_v2
    - sigs_view
    range: string
    required: false
  libraries:
    name: libraries
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: libraries
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  finishing_quality:
    name: finishing_quality
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: finishing_quality
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  sequencing_platforms:
    name: sequencing_platforms
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: sequencing_platforms
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  fold_coverage:
    name: fold_coverage
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: fold_coverage
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  gene_calling_method:
    name: gene_calling_method
    from_schema: https://w3id.org/jgi/gold
    alias: gene_calling_method
    owner: sigs_view
    domain_of:
    - analysis_project
    - sigs_view
    range: string
    required: false
  assemblers:
    name: assemblers
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: assemblers
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  locus_tag:
    name: locus_tag
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: locus_tag
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false
  genbank_id:
    name: genbank_id
    from_schema: https://w3id.org/jgi/gold
    alias: genbank_id
    owner: sigs_view
    domain_of:
    - ncbi_genbank
    - sigs_view
    range: string
    required: false
  release_date:
    name: release_date
    from_schema: https://w3id.org/jgi/gold
    alias: release_date
    owner: sigs_view
    domain_of:
    - assembly
    - sigs_view
    range: datetime
    required: false
  culture_collection:
    name: culture_collection
    from_schema: https://w3id.org/jgi/gold
    alias: culture_collection
    owner: sigs_view
    domain_of:
    - analysis_project
    - sigs_view
    range: string
    required: false
  type_strain:
    name: type_strain
    from_schema: https://w3id.org/jgi/gold
    alias: type_strain
    owner: sigs_view
    domain_of:
    - organism_v2
    - sigs_view
    range: string
    required: false
  diseases:
    name: diseases
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: diseases
    owner: sigs_view
    domain_of:
    - sigs_view
    range: string
    required: false