Class: SraExperimentV2

URI: gold:SraExperimentV2

classDiagram class SraExperimentV2 click SraExperimentV2 href "../SraExperimentV2/" SraExperimentV2 : description SraExperimentV2 : is_public SraExperimentV2 : is_test SraExperimentV2 : library_instrument SraExperimentV2 : library_layout SraExperimentV2 : library_name SraExperimentV2 : library_selection SraExperimentV2 : library_source SraExperimentV2 : library_strategy SraExperimentV2 : project_id SraExperimentV2 --> "0..1" Project : project_id click Project href "../Project/" SraExperimentV2 : sequencing_method_id SraExperimentV2 --> "0..1" SequencingMethod : sequencing_method_id click SequencingMethod href "../SequencingMethod/" SraExperimentV2 : spot_length SraExperimentV2 : sra_experiment_id SraExperimentV2 : sra_ncbi_id SraExperimentV2 : sra_sample_id SraExperimentV2 --> "0..1" SraSampleV2 : sra_sample_id click SraSampleV2 href "../SraSampleV2/" SraExperimentV2 : sra_study_id SraExperimentV2 : submitter_id SraExperimentV2 : title

Slots

Name	Cardinality and Range	Description	Inheritance
sra_experiment_id	0..1 String		direct
project_id	0..1 Project	Foreign key to project	direct
sra_sample_id	0..1 SraSampleV2	Foreign key to sra_sample_v2	direct
sra_ncbi_id	0..1 Float		direct
sequencing_method_id	0..1 SequencingMethod	Foreign key to sequencing_method	direct
title	0..1 String		direct
description	0..1 String		direct
submitter_id	0..1 Float		direct
library_strategy	0..1 String		direct
library_source	0..1 String		direct
library_selection	0..1 String		direct
library_name	0..1 String		direct
library_layout	0..1 String		direct
library_instrument	0..1 String		direct
is_public	0..1 String		direct
is_test	0..1 String		direct
sra_study_id	0..1 String		direct
spot_length	0..1 Float		direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/gold

Mappings

Mapping Type	Mapped Value
self	gold:SraExperimentV2
native	gold:SraExperimentV2

LinkML Source

Direct

name: sra_experiment_v2
from_schema: https://w3id.org/jgi/gold
attributes:
  sra_experiment_id:
    name: sra_experiment_id
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - ncbi_raw_sra_run
    - sra_experiment_v2
    range: string
    required: false
  project_id:
    name: project_id
    description: Foreign key to project
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - project
    - project_analysis_project
    - sra_experiment_v2
    range: project
    required: false
  sra_sample_id:
    name: sra_sample_id
    description: Foreign key to sra_sample_v2
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sra_experiment_v2
    - sra_sample_v2
    range: sra_sample_v2
    required: false
  sra_ncbi_id:
    name: sra_ncbi_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sra_experiment_v2
    range: float
    required: false
  sequencing_method_id:
    name: sequencing_method_id
    description: Foreign key to sequencing_method
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sra_experiment_v2
    range: sequencing_method
    required: false
  title:
    name: title
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - excel
    - ncbi_raw_sra_run
    - sra_experiment_v2
    - sra_sample_v2
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - dw_sequencing_product
    - ncbi_raw_sra_run
    - project
    - sra_experiment_v2
    - study
    range: string
    required: false
  submitter_id:
    name: submitter_id
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - organism_v2
    - project
    - sra_experiment_v2
    range: float
    required: false
  library_strategy:
    name: library_strategy
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sra_experiment_v2
    range: string
    required: false
  library_source:
    name: library_source
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sra_experiment_v2
    range: string
    required: false
  library_selection:
    name: library_selection
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sra_experiment_v2
    range: string
    required: false
  library_name:
    name: library_name
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - assembly
    - sra_experiment_v2
    range: string
    required: false
  library_layout:
    name: library_layout
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - project
    - sra_experiment_v2
    range: string
    required: false
  library_instrument:
    name: library_instrument
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sra_experiment_v2
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - project
    - sra_experiment_v2
    - sra_sample_v2
    - study
    range: string
    required: false
  is_test:
    name: is_test
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - project
    - sra_experiment_v2
    - sra_sample_v2
    - study
    range: string
    required: false
  sra_study_id:
    name: sra_study_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sra_experiment_v2
    range: string
    required: false
  spot_length:
    name: spot_length
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - sra_experiment_v2
    range: float
    required: false

Induced

name: sra_experiment_v2
from_schema: https://w3id.org/jgi/gold
attributes:
  sra_experiment_id:
    name: sra_experiment_id
    from_schema: https://w3id.org/jgi/gold
    alias: sra_experiment_id
    owner: sra_experiment_v2
    domain_of:
    - ncbi_raw_sra_run
    - sra_experiment_v2
    range: string
    required: false
  project_id:
    name: project_id
    description: Foreign key to project
    from_schema: https://w3id.org/jgi/gold
    alias: project_id
    owner: sra_experiment_v2
    domain_of:
    - project
    - project_analysis_project
    - sra_experiment_v2
    range: project
    required: false
  sra_sample_id:
    name: sra_sample_id
    description: Foreign key to sra_sample_v2
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: sra_sample_id
    owner: sra_experiment_v2
    domain_of:
    - sra_experiment_v2
    - sra_sample_v2
    range: sra_sample_v2
    required: false
  sra_ncbi_id:
    name: sra_ncbi_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: sra_ncbi_id
    owner: sra_experiment_v2
    domain_of:
    - sra_experiment_v2
    range: float
    required: false
  sequencing_method_id:
    name: sequencing_method_id
    description: Foreign key to sequencing_method
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: sequencing_method_id
    owner: sra_experiment_v2
    domain_of:
    - sra_experiment_v2
    range: sequencing_method
    required: false
  title:
    name: title
    from_schema: https://w3id.org/jgi/gold
    alias: title
    owner: sra_experiment_v2
    domain_of:
    - excel
    - ncbi_raw_sra_run
    - sra_experiment_v2
    - sra_sample_v2
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/gold
    alias: description
    owner: sra_experiment_v2
    domain_of:
    - biosample
    - dw_sequencing_product
    - ncbi_raw_sra_run
    - project
    - sra_experiment_v2
    - study
    range: string
    required: false
  submitter_id:
    name: submitter_id
    from_schema: https://w3id.org/jgi/gold
    alias: submitter_id
    owner: sra_experiment_v2
    domain_of:
    - biosample
    - organism_v2
    - project
    - sra_experiment_v2
    range: float
    required: false
  library_strategy:
    name: library_strategy
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: library_strategy
    owner: sra_experiment_v2
    domain_of:
    - sra_experiment_v2
    range: string
    required: false
  library_source:
    name: library_source
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: library_source
    owner: sra_experiment_v2
    domain_of:
    - sra_experiment_v2
    range: string
    required: false
  library_selection:
    name: library_selection
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: library_selection
    owner: sra_experiment_v2
    domain_of:
    - sra_experiment_v2
    range: string
    required: false
  library_name:
    name: library_name
    from_schema: https://w3id.org/jgi/gold
    alias: library_name
    owner: sra_experiment_v2
    domain_of:
    - assembly
    - sra_experiment_v2
    range: string
    required: false
  library_layout:
    name: library_layout
    from_schema: https://w3id.org/jgi/gold
    alias: library_layout
    owner: sra_experiment_v2
    domain_of:
    - project
    - sra_experiment_v2
    range: string
    required: false
  library_instrument:
    name: library_instrument
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: library_instrument
    owner: sra_experiment_v2
    domain_of:
    - sra_experiment_v2
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/gold
    alias: is_public
    owner: sra_experiment_v2
    domain_of:
    - analysis_project
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - project
    - sra_experiment_v2
    - sra_sample_v2
    - study
    range: string
    required: false
  is_test:
    name: is_test
    from_schema: https://w3id.org/jgi/gold
    alias: is_test
    owner: sra_experiment_v2
    domain_of:
    - analysis_project
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - project
    - sra_experiment_v2
    - sra_sample_v2
    - study
    range: string
    required: false
  sra_study_id:
    name: sra_study_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: sra_study_id
    owner: sra_experiment_v2
    domain_of:
    - sra_experiment_v2
    range: string
    required: false
  spot_length:
    name: spot_length
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: spot_length
    owner: sra_experiment_v2
    domain_of:
    - sra_experiment_v2
    range: float
    required: false