Class: Study

URI: gold:Study

classDiagram class Study click Study href "../Study/" Study : active Study : add_date Study : admin_ap_count Study : admin_biosample_count Study : admin_dap_count Study : admin_sp_count Study : contact_id Study : description Study : ecosystem Study : ecosystem_category Study : ecosystem_path_id Study : ecosystem_subtype Study : ecosystem_type Study : gold_id Study : gold_study_name Study : gpts_proposal_id Study : is_draft Study : is_geba Study : is_hmp Study : is_public Study : is_test Study : its_proposal_id Study : last_mod_by Study : legacy_gold_id Study : metagenomic Study : mod_date Study : owner_id Study : project_oid Study : public_ap_count Study : public_biosample_count Study : public_dap_count Study : public_sp_count Study : specific_ecosystem Study : study_id Study : study_name Study : study_type_id

Slots

Name	Cardinality and Range	Inheritance
study_id	0..1 Float	direct
its_proposal_id	0..1 Float	direct
gpts_proposal_id	0..1 Float	direct
active	0..1 String	direct
is_public	0..1 String	direct
add_date	0..1 Datetime	direct
mod_date	0..1 Datetime	direct
last_mod_by	0..1 Float	direct
gold_id	0..1 String	direct
study_name	0..1 String	direct
metagenomic	0..1 String	direct
ecosystem_path_id	0..1 Float	direct
ecosystem	0..1 String	direct
ecosystem_category	0..1 String	direct
ecosystem_type	0..1 String	direct
ecosystem_subtype	0..1 String	direct
specific_ecosystem	0..1 String	direct
project_oid	0..1 Float	direct
legacy_gold_id	0..1 String	direct
study_type_id	0..1 Float	direct
description	0..1 String	direct
owner_id	0..1 Float	direct
contact_id	0..1 Float	direct
public_sp_count	0..1 Float	direct
admin_sp_count	0..1 Float	direct
public_ap_count	0..1 Float	direct
admin_ap_count	0..1 Float	direct
public_dap_count	0..1 Float	direct
admin_dap_count	0..1 Float	direct
public_biosample_count	0..1 Float	direct
admin_biosample_count	0..1 Float	direct
is_geba	0..1 String	direct
is_hmp	0..1 String	direct
is_draft	0..1 String	direct
is_test	0..1 String	direct
gold_study_name	0..1 String	direct

Usages

used by	used in	type	used
AnalysisProject	study_id	range	Study
Project	master_study_id	range	Study

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/gold

Mappings

Mapping Type	Mapped Value
self	gold:Study
native	gold:Study

LinkML Source

Direct

name: study
from_schema: https://w3id.org/jgi/gold
attributes:
  study_id:
    name: study_id
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - study
    range: float
    required: false
  its_proposal_id:
    name: its_proposal_id
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - project
    - study
    range: float
    required: false
  gpts_proposal_id:
    name: gpts_proposal_id
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - project
    - study
    range: float
    required: false
  active:
    name: active
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - dw_sequencing_product
    - organism_v2
    - project
    - study
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - project
    - sra_experiment_v2
    - sra_sample_v2
    - study
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - api_user
    - bacdive
    - biosample
    - excel
    - organism_v2
    - package_soil
    - project
    - study
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - api_user
    - bacdive
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - package_soil
    - project
    - study
    range: datetime
    required: false
  last_mod_by:
    name: last_mod_by
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - study
    range: float
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - project
    - study
    range: string
    required: false
  study_name:
    name: study_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - study
    range: string
    required: false
  metagenomic:
    name: metagenomic
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - study
    range: string
    required: false
  ecosystem_path_id:
    name: ecosystem_path_id
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - study
    range: float
    required: false
  ecosystem:
    name: ecosystem
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - sigs_view
    - study
    range: string
    required: false
  ecosystem_category:
    name: ecosystem_category
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - sigs_view
    - study
    range: string
    required: false
  ecosystem_type:
    name: ecosystem_type
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - study
    range: string
    required: false
  ecosystem_subtype:
    name: ecosystem_subtype
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - study
    range: string
    required: false
  specific_ecosystem:
    name: specific_ecosystem
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - study
    range: string
    required: false
  project_oid:
    name: project_oid
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - organism_v2
    - project
    - study
    range: float
    required: false
  legacy_gold_id:
    name: legacy_gold_id
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - project
    - study
    range: string
    required: false
  study_type_id:
    name: study_type_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - study
    range: float
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - dw_sequencing_product
    - ncbi_raw_sra_run
    - project
    - sra_experiment_v2
    - study
    range: string
    required: false
  owner_id:
    name: owner_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - study
    range: float
    required: false
  contact_id:
    name: contact_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - study
    range: float
    required: false
  public_sp_count:
    name: public_sp_count
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - organism_v2
    - study
    range: float
    required: false
  admin_sp_count:
    name: admin_sp_count
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - organism_v2
    - study
    range: float
    required: false
  public_ap_count:
    name: public_ap_count
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - organism_v2
    - project
    - study
    range: float
    required: false
  admin_ap_count:
    name: admin_ap_count
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - organism_v2
    - project
    - study
    range: float
    required: false
  public_dap_count:
    name: public_dap_count
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - project
    - study
    range: float
    required: false
  admin_dap_count:
    name: admin_dap_count
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - project
    - study
    range: float
    required: false
  public_biosample_count:
    name: public_biosample_count
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - study
    range: float
    required: false
  admin_biosample_count:
    name: admin_biosample_count
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - study
    range: float
    required: false
  is_geba:
    name: is_geba
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - study
    range: string
    required: false
  is_hmp:
    name: is_hmp
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - study
    range: string
    required: false
  is_draft:
    name: is_draft
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - biosample
    - organism_v2
    - project
    - study
    range: string
    required: false
  is_test:
    name: is_test
    from_schema: https://w3id.org/jgi/gold
    domain_of:
    - analysis_project
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - project
    - sra_experiment_v2
    - sra_sample_v2
    - study
    range: string
    required: false
  gold_study_name:
    name: gold_study_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    domain_of:
    - study
    range: string
    required: false

Induced

name: study
from_schema: https://w3id.org/jgi/gold
attributes:
  study_id:
    name: study_id
    from_schema: https://w3id.org/jgi/gold
    alias: study_id
    owner: study
    domain_of:
    - analysis_project
    - study
    range: float
    required: false
  its_proposal_id:
    name: its_proposal_id
    from_schema: https://w3id.org/jgi/gold
    alias: its_proposal_id
    owner: study
    domain_of:
    - project
    - study
    range: float
    required: false
  gpts_proposal_id:
    name: gpts_proposal_id
    from_schema: https://w3id.org/jgi/gold
    alias: gpts_proposal_id
    owner: study
    domain_of:
    - project
    - study
    range: float
    required: false
  active:
    name: active
    from_schema: https://w3id.org/jgi/gold
    alias: active
    owner: study
    domain_of:
    - biosample
    - dw_sequencing_product
    - organism_v2
    - project
    - study
    range: string
    required: false
  is_public:
    name: is_public
    from_schema: https://w3id.org/jgi/gold
    alias: is_public
    owner: study
    domain_of:
    - analysis_project
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - project
    - sra_experiment_v2
    - sra_sample_v2
    - study
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/gold
    alias: add_date
    owner: study
    domain_of:
    - analysis_project
    - api_user
    - bacdive
    - biosample
    - excel
    - organism_v2
    - package_soil
    - project
    - study
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/gold
    alias: mod_date
    owner: study
    domain_of:
    - analysis_project
    - api_user
    - bacdive
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - package_soil
    - project
    - study
    range: datetime
    required: false
  last_mod_by:
    name: last_mod_by
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: last_mod_by
    owner: study
    domain_of:
    - study
    range: float
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/gold
    alias: gold_id
    owner: study
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - project
    - study
    range: string
    required: false
  study_name:
    name: study_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: study_name
    owner: study
    domain_of:
    - study
    range: string
    required: false
  metagenomic:
    name: metagenomic
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: metagenomic
    owner: study
    domain_of:
    - study
    range: string
    required: false
  ecosystem_path_id:
    name: ecosystem_path_id
    from_schema: https://w3id.org/jgi/gold
    alias: ecosystem_path_id
    owner: study
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - study
    range: float
    required: false
  ecosystem:
    name: ecosystem
    from_schema: https://w3id.org/jgi/gold
    alias: ecosystem
    owner: study
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - sigs_view
    - study
    range: string
    required: false
  ecosystem_category:
    name: ecosystem_category
    from_schema: https://w3id.org/jgi/gold
    alias: ecosystem_category
    owner: study
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - sigs_view
    - study
    range: string
    required: false
  ecosystem_type:
    name: ecosystem_type
    from_schema: https://w3id.org/jgi/gold
    alias: ecosystem_type
    owner: study
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - study
    range: string
    required: false
  ecosystem_subtype:
    name: ecosystem_subtype
    from_schema: https://w3id.org/jgi/gold
    alias: ecosystem_subtype
    owner: study
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - study
    range: string
    required: false
  specific_ecosystem:
    name: specific_ecosystem
    from_schema: https://w3id.org/jgi/gold
    alias: specific_ecosystem
    owner: study
    domain_of:
    - analysis_project
    - biosample
    - organism_v2
    - study
    range: string
    required: false
  project_oid:
    name: project_oid
    from_schema: https://w3id.org/jgi/gold
    alias: project_oid
    owner: study
    domain_of:
    - biosample
    - organism_v2
    - project
    - study
    range: float
    required: false
  legacy_gold_id:
    name: legacy_gold_id
    from_schema: https://w3id.org/jgi/gold
    alias: legacy_gold_id
    owner: study
    domain_of:
    - project
    - study
    range: string
    required: false
  study_type_id:
    name: study_type_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: study_type_id
    owner: study
    domain_of:
    - study
    range: float
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/gold
    alias: description
    owner: study
    domain_of:
    - biosample
    - dw_sequencing_product
    - ncbi_raw_sra_run
    - project
    - sra_experiment_v2
    - study
    range: string
    required: false
  owner_id:
    name: owner_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: owner_id
    owner: study
    domain_of:
    - study
    range: float
    required: false
  contact_id:
    name: contact_id
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: contact_id
    owner: study
    domain_of:
    - study
    range: float
    required: false
  public_sp_count:
    name: public_sp_count
    from_schema: https://w3id.org/jgi/gold
    alias: public_sp_count
    owner: study
    domain_of:
    - biosample
    - organism_v2
    - study
    range: float
    required: false
  admin_sp_count:
    name: admin_sp_count
    from_schema: https://w3id.org/jgi/gold
    alias: admin_sp_count
    owner: study
    domain_of:
    - biosample
    - organism_v2
    - study
    range: float
    required: false
  public_ap_count:
    name: public_ap_count
    from_schema: https://w3id.org/jgi/gold
    alias: public_ap_count
    owner: study
    domain_of:
    - biosample
    - organism_v2
    - project
    - study
    range: float
    required: false
  admin_ap_count:
    name: admin_ap_count
    from_schema: https://w3id.org/jgi/gold
    alias: admin_ap_count
    owner: study
    domain_of:
    - biosample
    - organism_v2
    - project
    - study
    range: float
    required: false
  public_dap_count:
    name: public_dap_count
    from_schema: https://w3id.org/jgi/gold
    alias: public_dap_count
    owner: study
    domain_of:
    - biosample
    - project
    - study
    range: float
    required: false
  admin_dap_count:
    name: admin_dap_count
    from_schema: https://w3id.org/jgi/gold
    alias: admin_dap_count
    owner: study
    domain_of:
    - biosample
    - project
    - study
    range: float
    required: false
  public_biosample_count:
    name: public_biosample_count
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: public_biosample_count
    owner: study
    domain_of:
    - study
    range: float
    required: false
  admin_biosample_count:
    name: admin_biosample_count
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: admin_biosample_count
    owner: study
    domain_of:
    - study
    range: float
    required: false
  is_geba:
    name: is_geba
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: is_geba
    owner: study
    domain_of:
    - study
    range: string
    required: false
  is_hmp:
    name: is_hmp
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: is_hmp
    owner: study
    domain_of:
    - study
    range: string
    required: false
  is_draft:
    name: is_draft
    from_schema: https://w3id.org/jgi/gold
    alias: is_draft
    owner: study
    domain_of:
    - biosample
    - organism_v2
    - project
    - study
    range: string
    required: false
  is_test:
    name: is_test
    from_schema: https://w3id.org/jgi/gold
    alias: is_test
    owner: study
    domain_of:
    - analysis_project
    - biosample
    - ncbi_raw_sra_run
    - organism_v2
    - project
    - sra_experiment_v2
    - sra_sample_v2
    - study
    range: string
    required: false
  gold_study_name:
    name: gold_study_name
    from_schema: https://w3id.org/jgi/gold
    rank: 1000
    alias: gold_study_name
    owner: study
    domain_of:
    - study
    range: string
    required: false