Class: BiocycComp

URI: img_core_v400:BiocycComp

classDiagram class BiocycComp click BiocycComp href "../BiocycComp/" BiocycComp : comments BiocycComp : common_name BiocycComp : db_source BiocycComp --> "0..1" DbSource : db_source click DbSource href "../DbSource/" BiocycComp : formula BiocycComp : inch_i_key BiocycComp : mol_wt BiocycComp : smiles BiocycComp : systematic_name BiocycComp : unique_id

Slots

Name	Cardinality and Range	Description	Inheritance
unique_id	0..1 String		direct
mol_wt	0..1 Float		direct
common_name	0..1 String		direct
systematic_name	0..1 String		direct
comments	0..1 String		direct
smiles	0..1 String		direct
db_source	0..1 DbSource	Foreign key to db_source	direct
formula	0..1 String		direct
inch_i_key	0..1 String		direct

Usages

used by	used in	type	used
BiocycCompExtLinks	unique_id	range	BiocycComp
BiocycCompSynonyms	unique_id	range	BiocycComp
BiocycCompTypes	unique_id	range	BiocycComp
BiocycReactionLeftHand	substrate	range	BiocycComp
BiocycReactionRightHand	substrate	range	BiocycComp

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:BiocycComp
native	img_core_v400:BiocycComp

LinkML Source

Direct

name: biocyc_comp
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  unique_id:
    name: unique_id
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_class
    - biocyc_class_parents
    - biocyc_class_synonyms
    - biocyc_class_types
    - biocyc_comp
    - biocyc_comp_ext_links
    - biocyc_comp_synonyms
    - biocyc_comp_types
    - biocyc_enzrxn
    - biocyc_enzrxn_ext_links
    - biocyc_enzrxn_prosth_groups
    - biocyc_enzrxn_synonyms
    - biocyc_pathway
    - biocyc_pathway_comments
    - biocyc_pathway_ext_links
    - biocyc_pathway_in_species
    - biocyc_pathway_pwy_links
    - biocyc_pathway_sub_pwys
    - biocyc_pathway_super_pwys
    - biocyc_pathway_taxon_range
    - biocyc_pathway_types
    - biocyc_protein
    - biocyc_protein_catalyzes
    - biocyc_protein_ext_links
    - biocyc_protein_in_species
    - biocyc_protein_synonyms
    - biocyc_protein_types
    - biocyc_reaction
    - biocyc_reaction_ext_links
    - biocyc_reaction_in_pwys
    - biocyc_reaction_left_hand
    - biocyc_reaction_right_hand
    - biocyc_reaction_synonyms
    - biocyc_reaction_types
    range: string
    required: false
  mol_wt:
    name: mol_wt
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - biocyc_comp
    range: float
    required: false
  common_name:
    name: common_name
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway
    - biocyc_protein
    - biocyc_reaction
    - compound
    - gene_biocyc_rxns
    range: string
    required: false
  systematic_name:
    name: systematic_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - biocyc_comp
    - biocyc_protein
    - enzyme
    - enzyme_transferred
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - gene_sig_peptides
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    - taxon
    - taxon_prod_vw
    - taxon_replacements
    range: string
    required: false
  smiles:
    name: smiles
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - biocyc_comp
    - compound
    range: string
    required: false
  db_source:
    name: db_source
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - biocyc_comp
    - cog
    - compound
    - go_term
    - kegg_pathway
    - kog
    - pfam_family
    - scaffold
    range: db_source
    required: false
  formula:
    name: formula
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - biocyc_comp
    - compound
    range: string
    required: false
  inch_i_key:
    name: inch_i_key
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - biocyc_comp
    range: string
    required: false

Induced

name: biocyc_comp
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  unique_id:
    name: unique_id
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: unique_id
    owner: biocyc_comp
    domain_of:
    - biocyc_class
    - biocyc_class_parents
    - biocyc_class_synonyms
    - biocyc_class_types
    - biocyc_comp
    - biocyc_comp_ext_links
    - biocyc_comp_synonyms
    - biocyc_comp_types
    - biocyc_enzrxn
    - biocyc_enzrxn_ext_links
    - biocyc_enzrxn_prosth_groups
    - biocyc_enzrxn_synonyms
    - biocyc_pathway
    - biocyc_pathway_comments
    - biocyc_pathway_ext_links
    - biocyc_pathway_in_species
    - biocyc_pathway_pwy_links
    - biocyc_pathway_sub_pwys
    - biocyc_pathway_super_pwys
    - biocyc_pathway_taxon_range
    - biocyc_pathway_types
    - biocyc_protein
    - biocyc_protein_catalyzes
    - biocyc_protein_ext_links
    - biocyc_protein_in_species
    - biocyc_protein_synonyms
    - biocyc_protein_types
    - biocyc_reaction
    - biocyc_reaction_ext_links
    - biocyc_reaction_in_pwys
    - biocyc_reaction_left_hand
    - biocyc_reaction_right_hand
    - biocyc_reaction_synonyms
    - biocyc_reaction_types
    range: string
    required: false
  mol_wt:
    name: mol_wt
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: mol_wt
    owner: biocyc_comp
    domain_of:
    - biocyc_comp
    range: float
    required: false
  common_name:
    name: common_name
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: common_name
    owner: biocyc_comp
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway
    - biocyc_protein
    - biocyc_reaction
    - compound
    - gene_biocyc_rxns
    range: string
    required: false
  systematic_name:
    name: systematic_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: systematic_name
    owner: biocyc_comp
    domain_of:
    - biocyc_comp
    - biocyc_protein
    - enzyme
    - enzyme_transferred
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: comments
    owner: biocyc_comp
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - gene_sig_peptides
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    - taxon
    - taxon_prod_vw
    - taxon_replacements
    range: string
    required: false
  smiles:
    name: smiles
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: smiles
    owner: biocyc_comp
    domain_of:
    - biocyc_comp
    - compound
    range: string
    required: false
  db_source:
    name: db_source
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: db_source
    owner: biocyc_comp
    domain_of:
    - biocyc_comp
    - cog
    - compound
    - go_term
    - kegg_pathway
    - kog
    - pfam_family
    - scaffold
    range: db_source
    required: false
  formula:
    name: formula
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: formula
    owner: biocyc_comp
    domain_of:
    - biocyc_comp
    - compound
    range: string
    required: false
  inch_i_key:
    name: inch_i_key
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: inch_i_key
    owner: biocyc_comp
    domain_of:
    - biocyc_comp
    range: string
    required: false