Class: BiocycProtein
URI: img_core_v400:BiocycProtein
classDiagram
class BiocycProtein
click BiocycProtein href "../BiocycProtein/"
BiocycProtein : biocyc_gene
BiocycProtein : comments
BiocycProtein : common_name
BiocycProtein : func_status
BiocycProtein : systematic_name
BiocycProtein : unique_id
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| unique_id | 0..1 String |
direct | |
| common_name | 0..1 String |
direct | |
| systematic_name | 0..1 String |
direct | |
| comments | 0..1 String |
direct | |
| func_status | 0..1 String |
direct | |
| biocyc_gene | 0..1 String |
direct |
Usages
| used by | used in | type | used |
|---|---|---|---|
| BiocycEnzrxn | biocyc_enzyme | range | BiocycProtein |
| BiocycProteinCatalyzes | unique_id | range | BiocycProtein |
| BiocycProteinExtLinks | unique_id | range | BiocycProtein |
| BiocycProteinInSpecies | unique_id | range | BiocycProtein |
| BiocycProteinSynonyms | unique_id | range | BiocycProtein |
| BiocycProteinTypes | unique_id | range | BiocycProtein |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/jgi/img_core_v400
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | img_core_v400:BiocycProtein |
| native | img_core_v400:BiocycProtein |
LinkML Source
Direct
name: biocyc_protein
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
unique_id:
name: unique_id
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- biocyc_class
- biocyc_class_parents
- biocyc_class_synonyms
- biocyc_class_types
- biocyc_comp
- biocyc_comp_ext_links
- biocyc_comp_synonyms
- biocyc_comp_types
- biocyc_enzrxn
- biocyc_enzrxn_ext_links
- biocyc_enzrxn_prosth_groups
- biocyc_enzrxn_synonyms
- biocyc_pathway
- biocyc_pathway_comments
- biocyc_pathway_ext_links
- biocyc_pathway_in_species
- biocyc_pathway_pwy_links
- biocyc_pathway_sub_pwys
- biocyc_pathway_super_pwys
- biocyc_pathway_taxon_range
- biocyc_pathway_types
- biocyc_protein
- biocyc_protein_catalyzes
- biocyc_protein_ext_links
- biocyc_protein_in_species
- biocyc_protein_synonyms
- biocyc_protein_types
- biocyc_reaction
- biocyc_reaction_ext_links
- biocyc_reaction_in_pwys
- biocyc_reaction_left_hand
- biocyc_reaction_right_hand
- biocyc_reaction_synonyms
- biocyc_reaction_types
range: string
required: false
common_name:
name: common_name
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- biocyc_class
- biocyc_comp
- biocyc_enzrxn
- biocyc_pathway
- biocyc_protein
- biocyc_reaction
- compound
- gene_biocyc_rxns
range: string
required: false
systematic_name:
name: systematic_name
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- biocyc_comp
- biocyc_protein
- enzyme
- enzyme_transferred
range: string
required: false
comments:
name: comments
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- biocyc_class
- biocyc_comp
- biocyc_enzrxn
- biocyc_pathway_comments
- biocyc_protein
- biocyc_reaction
- enzyme
- enzyme_transferred
- gene_sig_peptides
- go_term
- pfam_clan
- pfam_dead
- pfam_family
- reaction
- taxon
- taxon_prod_vw
- taxon_replacements
range: string
required: false
func_status:
name: func_status
from_schema: https://w3id.org/jgi/img_core_v400
rank: 1000
domain_of:
- biocyc_protein
range: string
required: false
biocyc_gene:
name: biocyc_gene
from_schema: https://w3id.org/jgi/img_core_v400
rank: 1000
domain_of:
- biocyc_protein
range: string
required: false
Induced
name: biocyc_protein
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
unique_id:
name: unique_id
from_schema: https://w3id.org/jgi/img_core_v400
alias: unique_id
owner: biocyc_protein
domain_of:
- biocyc_class
- biocyc_class_parents
- biocyc_class_synonyms
- biocyc_class_types
- biocyc_comp
- biocyc_comp_ext_links
- biocyc_comp_synonyms
- biocyc_comp_types
- biocyc_enzrxn
- biocyc_enzrxn_ext_links
- biocyc_enzrxn_prosth_groups
- biocyc_enzrxn_synonyms
- biocyc_pathway
- biocyc_pathway_comments
- biocyc_pathway_ext_links
- biocyc_pathway_in_species
- biocyc_pathway_pwy_links
- biocyc_pathway_sub_pwys
- biocyc_pathway_super_pwys
- biocyc_pathway_taxon_range
- biocyc_pathway_types
- biocyc_protein
- biocyc_protein_catalyzes
- biocyc_protein_ext_links
- biocyc_protein_in_species
- biocyc_protein_synonyms
- biocyc_protein_types
- biocyc_reaction
- biocyc_reaction_ext_links
- biocyc_reaction_in_pwys
- biocyc_reaction_left_hand
- biocyc_reaction_right_hand
- biocyc_reaction_synonyms
- biocyc_reaction_types
range: string
required: false
common_name:
name: common_name
from_schema: https://w3id.org/jgi/img_core_v400
alias: common_name
owner: biocyc_protein
domain_of:
- biocyc_class
- biocyc_comp
- biocyc_enzrxn
- biocyc_pathway
- biocyc_protein
- biocyc_reaction
- compound
- gene_biocyc_rxns
range: string
required: false
systematic_name:
name: systematic_name
from_schema: https://w3id.org/jgi/img_core_v400
alias: systematic_name
owner: biocyc_protein
domain_of:
- biocyc_comp
- biocyc_protein
- enzyme
- enzyme_transferred
range: string
required: false
comments:
name: comments
from_schema: https://w3id.org/jgi/img_core_v400
alias: comments
owner: biocyc_protein
domain_of:
- biocyc_class
- biocyc_comp
- biocyc_enzrxn
- biocyc_pathway_comments
- biocyc_protein
- biocyc_reaction
- enzyme
- enzyme_transferred
- gene_sig_peptides
- go_term
- pfam_clan
- pfam_dead
- pfam_family
- reaction
- taxon
- taxon_prod_vw
- taxon_replacements
range: string
required: false
func_status:
name: func_status
from_schema: https://w3id.org/jgi/img_core_v400
rank: 1000
alias: func_status
owner: biocyc_protein
domain_of:
- biocyc_protein
range: string
required: false
biocyc_gene:
name: biocyc_gene
from_schema: https://w3id.org/jgi/img_core_v400
rank: 1000
alias: biocyc_gene
owner: biocyc_protein
domain_of:
- biocyc_protein
range: string
required: false