Class: CogSpecies

URI: img_core_v400:CogSpecies

classDiagram class CogSpecies click CogSpecies href "../CogSpecies/" CogSpecies : add_date CogSpecies : cog_species_name CogSpecies : species_code CogSpecies : species_family CogSpecies : taxon

Slots

Name	Cardinality and Range	Inheritance
species_code	0..1 String	direct
cog_species_name	0..1 String	direct
taxon	0..1 Integer	direct
species_family	0..1 String	direct
add_date	0..1 Datetime	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:CogSpecies
native	img_core_v400:CogSpecies

LinkML Source

Direct

name: cog_species
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  species_code:
    name: species_code
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - cog_species
    range: string
    required: false
  cog_species_name:
    name: cog_species_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - cog_species
    range: string
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - cog_species
    - dt_img_gene_prot_pep_sample
    - dt_taxon_node_lite
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - paralog_group
    - scaffold
    - scaffold_stats
    - taxon_node_lite
    range: integer
    required: false
  species_family:
    name: species_family
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - cog_species
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - bcg_taxons
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - gene
    - gene_biocyc_rxns
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - paralog_group
    - pfam_clan
    - pfam_family
    - positional_cluster
    - property_step
    - reaction
    - scaffold
    - taxon
    - taxon_prod_vw
    - tigr_role
    - tigrfam
    range: datetime
    required: false

Induced

name: cog_species
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  species_code:
    name: species_code
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: species_code
    owner: cog_species
    domain_of:
    - cog_species
    range: string
    required: false
  cog_species_name:
    name: cog_species_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: cog_species_name
    owner: cog_species
    domain_of:
    - cog_species
    range: string
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: taxon
    owner: cog_species
    domain_of:
    - cog_species
    - dt_img_gene_prot_pep_sample
    - dt_taxon_node_lite
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - paralog_group
    - scaffold
    - scaffold_stats
    - taxon_node_lite
    range: integer
    required: false
  species_family:
    name: species_family
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: species_family
    owner: cog_species
    domain_of:
    - cog_species
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: add_date
    owner: cog_species
    domain_of:
    - bcg_taxons
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - gene
    - gene_biocyc_rxns
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - paralog_group
    - pfam_clan
    - pfam_family
    - positional_cluster
    - property_step
    - reaction
    - scaffold
    - taxon
    - taxon_prod_vw
    - tigr_role
    - tigrfam
    range: datetime
    required: false