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Class: CompoundExtLinks

URI: img_core_v400:CompoundExtLinks

classDiagram class CompoundExtLinks click CompoundExtLinks href "../CompoundExtLinks/" CompoundExtLinks : db_name CompoundExtLinks --> "0..1" DbSource : db_name click DbSource href "../DbSource/" CompoundExtLinks : ext_accession CompoundExtLinks --> "0..1" Compound : ext_accession click Compound href "../Compound/" CompoundExtLinks : id

Slots

Name Cardinality and Range Description Inheritance
ext_accession 0..1
Compound		 Foreign key to compound direct
db_name 0..1
DbSource		 Foreign key to db_source direct
id 0..1
String		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type Mapped Value
self img_core_v400:CompoundExtLinks
native img_core_v400:CompoundExtLinks

LinkML Source

Direct

name: compound_ext_links
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  ext_accession:
    name: ext_accession
    description: Foreign key to compound
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - compound
    - compound_aliases
    - compound_ext_links
    - gene_tigrfams
    - interpro
    - interpro_go_terms
    - pfam_clan
    - pfam_clan_pfam_families
    - pfam_family
    - pfam_family_cogs
    - pfam_family_ext_links
    - pfam_family_genome_properties
    - reaction
    - reaction_compounds
    - reaction_enzymes
    - reaction_ext_links
    - scaffold
    - tigrfam
    - tigrfam_enzymes
    - tigrfam_genome_properties
    - tigrfam_roles
    range: compound
    required: false
  db_name:
    name: db_name
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_comp_ext_links
    - biocyc_enzrxn_ext_links
    - biocyc_pathway_ext_links
    - biocyc_protein_ext_links
    - biocyc_reaction_ext_links
    - compound_ext_links
    - enzyme_ext_links
    - gene_cathfam
    - gene_ext_links
    - gene_pdb_xrefs
    - gene_smart
    - gene_superfam
    - gene_xref_families
    - pfam_family_ext_links
    - reaction_ext_links
    - scaffold_ext_links
    - taxon_ext_links
    range: db_source
    required: false
  id:
    name: id
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_comp_ext_links
    - biocyc_enzrxn_ext_links
    - biocyc_pathway_ext_links
    - biocyc_protein_ext_links
    - biocyc_reaction_ext_links
    - compound_ext_links
    - enzyme_ext_links
    - gene_cathfam
    - gene_ext_links
    - gene_pdb_xrefs
    - gene_smart
    - gene_superfam
    - gene_xref_families
    - pfam_family_ext_links
    - reaction_ext_links
    - scaffold_ext_links
    - taxon_ext_links
    range: string
    required: false

Induced

name: compound_ext_links
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  ext_accession:
    name: ext_accession
    description: Foreign key to compound
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: ext_accession
    owner: compound_ext_links
    domain_of:
    - alt_transcript
    - compound
    - compound_aliases
    - compound_ext_links
    - gene_tigrfams
    - interpro
    - interpro_go_terms
    - pfam_clan
    - pfam_clan_pfam_families
    - pfam_family
    - pfam_family_cogs
    - pfam_family_ext_links
    - pfam_family_genome_properties
    - reaction
    - reaction_compounds
    - reaction_enzymes
    - reaction_ext_links
    - scaffold
    - tigrfam
    - tigrfam_enzymes
    - tigrfam_genome_properties
    - tigrfam_roles
    range: compound
    required: false
  db_name:
    name: db_name
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: db_name
    owner: compound_ext_links
    domain_of:
    - biocyc_comp_ext_links
    - biocyc_enzrxn_ext_links
    - biocyc_pathway_ext_links
    - biocyc_protein_ext_links
    - biocyc_reaction_ext_links
    - compound_ext_links
    - enzyme_ext_links
    - gene_cathfam
    - gene_ext_links
    - gene_pdb_xrefs
    - gene_smart
    - gene_superfam
    - gene_xref_families
    - pfam_family_ext_links
    - reaction_ext_links
    - scaffold_ext_links
    - taxon_ext_links
    range: db_source
    required: false
  id:
    name: id
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: id
    owner: compound_ext_links
    domain_of:
    - biocyc_comp_ext_links
    - biocyc_enzrxn_ext_links
    - biocyc_pathway_ext_links
    - biocyc_protein_ext_links
    - biocyc_reaction_ext_links
    - compound_ext_links
    - enzyme_ext_links
    - gene_cathfam
    - gene_ext_links
    - gene_pdb_xrefs
    - gene_smart
    - gene_superfam
    - gene_xref_families
    - pfam_family_ext_links
    - reaction_ext_links
    - scaffold_ext_links
    - taxon_ext_links
    range: string
    required: false