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Class: DbSource

URI: img_core_v400:DbSource

classDiagram class DbSource click DbSource href "../DbSource/" DbSource : base_url DbSource : db_code DbSource : name

Slots

Name Cardinality and Range Description Inheritance
db_code 0..1
String		 direct
name 0..1
String		 direct
base_url 0..1
String		 direct

Usages

used by used in type used
BiocycComp DbSource range DbSource
Cog DbSource range DbSource
Compound DbSource range DbSource
CompoundExtLinks db_name range DbSource
EnzymeExtLinks db_name range DbSource
GeneExtLinks db_name range DbSource
GenePdbXrefs db_name range DbSource
GeneXrefFamilies db_name range DbSource
GoTerm DbSource range DbSource
KeggPathway DbSource range DbSource
PfamFamilyExtLinks db_name range DbSource
ReactionExtLinks db_name range DbSource
Scaffold DbSource range DbSource
ScaffoldExtLinks db_name range DbSource
TaxonExtLinks db_name range DbSource

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type Mapped Value
self img_core_v400:DbSource
native img_core_v400:DbSource

LinkML Source

Direct

name: db_source
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  db_code:
    name: db_code
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - db_source
    range: string
    required: false
  name:
    name: name
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - cog2014
    - cogfunc2014
    - db_source
    - dt_cog
    - dt_img_term
    - dt_ko
    - dt_pfam
    - dt_tfam
    - exclude_func
    - genome_property
    - interpro
    - pfam_clan
    - pfam_dead
    - pfam_family
    - property_step
    - superfamily
    range: string
    required: false
  base_url:
    name: base_url
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - db_source
    range: string
    required: false

Induced

name: db_source
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  db_code:
    name: db_code
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: db_code
    owner: db_source
    domain_of:
    - db_source
    range: string
    required: false
  name:
    name: name
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: name
    owner: db_source
    domain_of:
    - alt_transcript
    - cog2014
    - cogfunc2014
    - db_source
    - dt_cog
    - dt_img_term
    - dt_ko
    - dt_pfam
    - dt_tfam
    - exclude_func
    - genome_property
    - interpro
    - pfam_clan
    - pfam_dead
    - pfam_family
    - property_step
    - superfamily
    range: string
    required: false
  base_url:
    name: base_url
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: base_url
    owner: db_source
    domain_of:
    - db_source
    range: string
    required: false