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Class: DtImgGeneProtPepSample

URI: img_core_v400:DtImgGeneProtPepSample

classDiagram class DtImgGeneProtPepSample click DtImgGeneProtPepSample href "../DtImgGeneProtPepSample/" DtImgGeneProtPepSample : coverage DtImgGeneProtPepSample : exp_oid DtImgGeneProtPepSample : gene_display_name DtImgGeneProtPepSample : gene_oid DtImgGeneProtPepSample : gene_seq_length DtImgGeneProtPepSample : pep_seq_length DtImgGeneProtPepSample : pep_spectral_cnt DtImgGeneProtPepSample : peptide_oid DtImgGeneProtPepSample : peptide_seq DtImgGeneProtPepSample : protein_oid DtImgGeneProtPepSample : sample_desc DtImgGeneProtPepSample : sample_oid DtImgGeneProtPepSample : taxon

Slots

Name Cardinality and Range Description Inheritance
gene_oid 0..1
Integer		 direct
taxon 0..1
Integer		 direct
gene_display_name 0..1
String		 direct
gene_seq_length 0..1
Integer		 direct
pep_seq_length 0..1
Integer		 direct
pep_spectral_cnt 0..1
Integer		 direct
coverage 0..1
Float		 direct
protein_oid 0..1
Integer		 direct
peptide_oid 0..1
Integer		 direct
peptide_seq 0..1
String		 direct
sample_oid 0..1
Integer		 direct
sample_desc 0..1
String		 direct
exp_oid 0..1
Integer		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type Mapped Value
self img_core_v400:DtImgGeneProtPepSample
native img_core_v400:DtImgGeneProtPepSample

LinkML Source

Direct

name: dt_img_gene_prot_pep_sample
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - cog_species
    - dt_img_gene_prot_pep_sample
    - dt_taxon_node_lite
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - paralog_group
    - scaffold
    - scaffold_stats
    - taxon_node_lite
    range: integer
    required: false
  gene_display_name:
    name: gene_display_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - dt_img_gene_prot_pep_sample
    - gene
    - kp_pseudo
    range: string
    required: false
  gene_seq_length:
    name: gene_seq_length
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: integer
    required: false
  pep_seq_length:
    name: pep_seq_length
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: integer
    required: false
  pep_spectral_cnt:
    name: pep_spectral_cnt
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: integer
    required: false
  coverage:
    name: coverage
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: float
    required: false
  protein_oid:
    name: protein_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: integer
    required: false
  peptide_oid:
    name: peptide_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: integer
    required: false
  peptide_seq:
    name: peptide_seq
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: string
    required: false
  sample_oid:
    name: sample_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: integer
    required: false
  sample_desc:
    name: sample_desc
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: string
    required: false
  exp_oid:
    name: exp_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: integer
    required: false

Induced

name: dt_img_gene_prot_pep_sample
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: gene_oid
    owner: dt_img_gene_prot_pep_sample
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: taxon
    owner: dt_img_gene_prot_pep_sample
    domain_of:
    - cog_species
    - dt_img_gene_prot_pep_sample
    - dt_taxon_node_lite
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - paralog_group
    - scaffold
    - scaffold_stats
    - taxon_node_lite
    range: integer
    required: false
  gene_display_name:
    name: gene_display_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: gene_display_name
    owner: dt_img_gene_prot_pep_sample
    domain_of:
    - dt_img_gene_prot_pep_sample
    - gene
    - kp_pseudo
    range: string
    required: false
  gene_seq_length:
    name: gene_seq_length
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: gene_seq_length
    owner: dt_img_gene_prot_pep_sample
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: integer
    required: false
  pep_seq_length:
    name: pep_seq_length
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: pep_seq_length
    owner: dt_img_gene_prot_pep_sample
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: integer
    required: false
  pep_spectral_cnt:
    name: pep_spectral_cnt
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: pep_spectral_cnt
    owner: dt_img_gene_prot_pep_sample
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: integer
    required: false
  coverage:
    name: coverage
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: coverage
    owner: dt_img_gene_prot_pep_sample
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: float
    required: false
  protein_oid:
    name: protein_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: protein_oid
    owner: dt_img_gene_prot_pep_sample
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: integer
    required: false
  peptide_oid:
    name: peptide_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: peptide_oid
    owner: dt_img_gene_prot_pep_sample
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: integer
    required: false
  peptide_seq:
    name: peptide_seq
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: peptide_seq
    owner: dt_img_gene_prot_pep_sample
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: string
    required: false
  sample_oid:
    name: sample_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: sample_oid
    owner: dt_img_gene_prot_pep_sample
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: integer
    required: false
  sample_desc:
    name: sample_desc
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: sample_desc
    owner: dt_img_gene_prot_pep_sample
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: string
    required: false
  exp_oid:
    name: exp_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: exp_oid
    owner: dt_img_gene_prot_pep_sample
    domain_of:
    - dt_img_gene_prot_pep_sample
    range: integer
    required: false