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Class: DtPhyloTaxonStats

URI: img_core_v400:DtPhyloTaxonStats

classDiagram class DtPhyloTaxonStats click DtPhyloTaxonStats href "../DtPhyloTaxonStats/" DtPhyloTaxonStats : data_type DtPhyloTaxonStats : est_copy_30 DtPhyloTaxonStats : est_copy_60 DtPhyloTaxonStats : est_copy_90 DtPhyloTaxonStats : gene_count_30 DtPhyloTaxonStats : gene_count_60 DtPhyloTaxonStats : gene_count_90 DtPhyloTaxonStats : homolog_taxon DtPhyloTaxonStats : taxon_oid

Slots

Name Cardinality and Range Description Inheritance
taxon_oid 0..1
Float		 direct
data_type 0..1
String		 direct
homolog_taxon 0..1
Float		 direct
gene_count_30 0..1
Float		 direct
gene_count_60 0..1
Float		 direct
gene_count_90 0..1
Float		 direct
est_copy_30 0..1
Float		 direct
est_copy_60 0..1
Float		 direct
est_copy_90 0..1
Float		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type Mapped Value
self img_core_v400:DtPhyloTaxonStats
native img_core_v400:DtPhyloTaxonStats

LinkML Source

Direct

name: dt_phylo_taxon_stats
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - asv5_taxons
    - bcg_taxons
    - dt_all_phylo_taxon_stats
    - dt_cog_stats
    - dt_kog_stats
    - dt_phylo_taxon_stats
    - dt_phylodist_new_taxons
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - dt_scog_genes
    - dt_taxon_kmodule_mcr
    - img_iuig_tarballs_11202023
    - img_umag_bin_tarballs_02062024
    - imgnr_taxons_062123
    - iso_plasmids
    - kp_actino
    - kp_taxons
    - new_taxons
    - new_taxons_batch
    - old_taxons
    - tarball_refresh_taxons
    - taxon
    - taxon_assembly_stats
    - taxon_cathfunfam_count
    - taxon_cog_count
    - taxon_crispr_details
    - taxon_crispr_summary
    - taxon_dw
    - taxon_ec_count
    - taxon_ext_links
    - taxon_gene_prefix
    - taxon_gtdbtk_lineage
    - taxon_ko_count
    - taxon_pfam_count
    - taxon_prod_vw
    - taxon_replacements
    - taxon_replacements_view
    - taxon_scaf_prefix
    - taxon_smart_count
    - taxon_smc_stats
    - taxon_stats
    - taxon_stats_merfs
    - taxon_stats_prod_vw
    - taxon_supfam_count
    - taxon_taxon_scaffold_info
    - taxon_tigr_count
    - vw_gold_taxon
    - vw_taxon_sc
    range: float
    required: false
  data_type:
    name: data_type
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    - taxon_cathfunfam_count
    - taxon_cog_count
    - taxon_ec_count
    - taxon_gene_prefix
    - taxon_ko_count
    - taxon_pfam_count
    - taxon_scaf_prefix
    - taxon_smart_count
    - taxon_supfam_count
    - taxon_tigr_count
    range: string
    required: false
  homolog_taxon:
    name: homolog_taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    - dt_phylum_dist_genes
    range: float
    required: false
  gene_count_30:
    name: gene_count_30
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    range: float
    required: false
  gene_count_60:
    name: gene_count_60
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    range: float
    required: false
  gene_count_90:
    name: gene_count_90
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    range: float
    required: false
  est_copy_30:
    name: est_copy_30
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    range: float
    required: false
  est_copy_60:
    name: est_copy_60
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    range: float
    required: false
  est_copy_90:
    name: est_copy_90
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    range: float
    required: false

Induced

name: dt_phylo_taxon_stats
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: taxon_oid
    owner: dt_phylo_taxon_stats
    domain_of:
    - asv5_taxons
    - bcg_taxons
    - dt_all_phylo_taxon_stats
    - dt_cog_stats
    - dt_kog_stats
    - dt_phylo_taxon_stats
    - dt_phylodist_new_taxons
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - dt_scog_genes
    - dt_taxon_kmodule_mcr
    - img_iuig_tarballs_11202023
    - img_umag_bin_tarballs_02062024
    - imgnr_taxons_062123
    - iso_plasmids
    - kp_actino
    - kp_taxons
    - new_taxons
    - new_taxons_batch
    - old_taxons
    - tarball_refresh_taxons
    - taxon
    - taxon_assembly_stats
    - taxon_cathfunfam_count
    - taxon_cog_count
    - taxon_crispr_details
    - taxon_crispr_summary
    - taxon_dw
    - taxon_ec_count
    - taxon_ext_links
    - taxon_gene_prefix
    - taxon_gtdbtk_lineage
    - taxon_ko_count
    - taxon_pfam_count
    - taxon_prod_vw
    - taxon_replacements
    - taxon_replacements_view
    - taxon_scaf_prefix
    - taxon_smart_count
    - taxon_smc_stats
    - taxon_stats
    - taxon_stats_merfs
    - taxon_stats_prod_vw
    - taxon_supfam_count
    - taxon_taxon_scaffold_info
    - taxon_tigr_count
    - vw_gold_taxon
    - vw_taxon_sc
    range: float
    required: false
  data_type:
    name: data_type
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: data_type
    owner: dt_phylo_taxon_stats
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    - taxon_cathfunfam_count
    - taxon_cog_count
    - taxon_ec_count
    - taxon_gene_prefix
    - taxon_ko_count
    - taxon_pfam_count
    - taxon_scaf_prefix
    - taxon_smart_count
    - taxon_supfam_count
    - taxon_tigr_count
    range: string
    required: false
  homolog_taxon:
    name: homolog_taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: homolog_taxon
    owner: dt_phylo_taxon_stats
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    - dt_phylum_dist_genes
    range: float
    required: false
  gene_count_30:
    name: gene_count_30
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: gene_count_30
    owner: dt_phylo_taxon_stats
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    range: float
    required: false
  gene_count_60:
    name: gene_count_60
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: gene_count_60
    owner: dt_phylo_taxon_stats
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    range: float
    required: false
  gene_count_90:
    name: gene_count_90
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: gene_count_90
    owner: dt_phylo_taxon_stats
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    range: float
    required: false
  est_copy_30:
    name: est_copy_30
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: est_copy_30
    owner: dt_phylo_taxon_stats
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    range: float
    required: false
  est_copy_60:
    name: est_copy_60
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: est_copy_60
    owner: dt_phylo_taxon_stats
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    range: float
    required: false
  est_copy_90:
    name: est_copy_90
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: est_copy_90
    owner: dt_phylo_taxon_stats
    domain_of:
    - dt_all_phylo_taxon_stats
    - dt_phylo_taxon_stats
    range: float
    required: false