Class: DtScogGenes
URI: img_core_v400:DtScogGenes
classDiagram
class DtScogGenes
click DtScogGenes href "../DtScogGenes/"
DtScogGenes : cog_id
DtScogGenes : gene_oid
DtScogGenes : taxon_oid
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| gene_oid | 0..1 Integer |
direct | |
| taxon_oid | 0..1 Integer |
direct | |
| cog_id | 0..1 String |
direct |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/jgi/img_core_v400
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | img_core_v400:DtScogGenes |
| native | img_core_v400:DtScogGenes |
LinkML Source
Direct
name: dt_scog_genes
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
gene_oid:
name: gene_oid
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- actino_abc_genes
- delete_genes
- dt_ht_hits
- dt_img_gene_prot_pep_sample
- dt_phylum_dist_genes
- dt_scog_genes
- gene
- gene_aliases
- gene_biocyc_rxns
- gene_cathfam
- gene_cog_groups
- gene_essential_genes
- gene_exceptions
- gene_ext_links
- gene_feature_tags
- gene_frag_coords
- gene_go_terms
- gene_img_interpro_hits
- gene_ko_enzymes
- gene_ko_enzymes_new
- gene_ko_terms
- gene_kog_groups
- gene_notes
- gene_paralogs
- gene_pdb_xrefs
- gene_pfam_families
- gene_sig_peptides
- gene_smart
- gene_superfam
- gene_tigrfams
- gene_xref_families
- kp_pseudo
- merfs_gene_mapping
- mv_gene_tmhmm_stats
- tmp_genes
range: integer
required: false
taxon_oid:
name: taxon_oid
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- asv5_taxons
- bcg_taxons
- dt_all_phylo_taxon_stats
- dt_cog_stats
- dt_kog_stats
- dt_phylo_taxon_stats
- dt_phylodist_new_taxons
- dt_phylum_dist_genes
- dt_phylum_dist_stats
- dt_scog_genes
- dt_taxon_kmodule_mcr
- img_iuig_tarballs_11202023
- img_umag_bin_tarballs_02062024
- imgnr_taxons_062123
- iso_plasmids
- kp_actino
- kp_taxons
- new_taxons
- new_taxons_batch
- old_taxons
- tarball_refresh_taxons
- taxon
- taxon_assembly_stats
- taxon_cathfunfam_count
- taxon_cog_count
- taxon_crispr_details
- taxon_crispr_summary
- taxon_dw
- taxon_ec_count
- taxon_ext_links
- taxon_gene_prefix
- taxon_gtdbtk_lineage
- taxon_ko_count
- taxon_pfam_count
- taxon_prod_vw
- taxon_replacements
- taxon_replacements_view
- taxon_scaf_prefix
- taxon_smart_count
- taxon_smc_stats
- taxon_stats
- taxon_stats_merfs
- taxon_stats_prod_vw
- taxon_supfam_count
- taxon_taxon_scaffold_info
- taxon_tigr_count
- vw_gold_taxon
- vw_taxon_sc
range: integer
required: false
cog_id:
name: cog_id
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- cog
- cog_families
- cog_functions
- dt_cog
- dt_scog_genes
- dt_scogs
- ko2cog
range: string
required: false
Induced
name: dt_scog_genes
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
gene_oid:
name: gene_oid
from_schema: https://w3id.org/jgi/img_core_v400
alias: gene_oid
owner: dt_scog_genes
domain_of:
- actino_abc_genes
- delete_genes
- dt_ht_hits
- dt_img_gene_prot_pep_sample
- dt_phylum_dist_genes
- dt_scog_genes
- gene
- gene_aliases
- gene_biocyc_rxns
- gene_cathfam
- gene_cog_groups
- gene_essential_genes
- gene_exceptions
- gene_ext_links
- gene_feature_tags
- gene_frag_coords
- gene_go_terms
- gene_img_interpro_hits
- gene_ko_enzymes
- gene_ko_enzymes_new
- gene_ko_terms
- gene_kog_groups
- gene_notes
- gene_paralogs
- gene_pdb_xrefs
- gene_pfam_families
- gene_sig_peptides
- gene_smart
- gene_superfam
- gene_tigrfams
- gene_xref_families
- kp_pseudo
- merfs_gene_mapping
- mv_gene_tmhmm_stats
- tmp_genes
range: integer
required: false
taxon_oid:
name: taxon_oid
from_schema: https://w3id.org/jgi/img_core_v400
alias: taxon_oid
owner: dt_scog_genes
domain_of:
- asv5_taxons
- bcg_taxons
- dt_all_phylo_taxon_stats
- dt_cog_stats
- dt_kog_stats
- dt_phylo_taxon_stats
- dt_phylodist_new_taxons
- dt_phylum_dist_genes
- dt_phylum_dist_stats
- dt_scog_genes
- dt_taxon_kmodule_mcr
- img_iuig_tarballs_11202023
- img_umag_bin_tarballs_02062024
- imgnr_taxons_062123
- iso_plasmids
- kp_actino
- kp_taxons
- new_taxons
- new_taxons_batch
- old_taxons
- tarball_refresh_taxons
- taxon
- taxon_assembly_stats
- taxon_cathfunfam_count
- taxon_cog_count
- taxon_crispr_details
- taxon_crispr_summary
- taxon_dw
- taxon_ec_count
- taxon_ext_links
- taxon_gene_prefix
- taxon_gtdbtk_lineage
- taxon_ko_count
- taxon_pfam_count
- taxon_prod_vw
- taxon_replacements
- taxon_replacements_view
- taxon_scaf_prefix
- taxon_smart_count
- taxon_smc_stats
- taxon_stats
- taxon_stats_merfs
- taxon_stats_prod_vw
- taxon_supfam_count
- taxon_taxon_scaffold_info
- taxon_tigr_count
- vw_gold_taxon
- vw_taxon_sc
range: integer
required: false
cog_id:
name: cog_id
from_schema: https://w3id.org/jgi/img_core_v400
alias: cog_id
owner: dt_scog_genes
domain_of:
- cog
- cog_families
- cog_functions
- dt_cog
- dt_scog_genes
- dt_scogs
- ko2cog
range: string
required: false