Class: Enzyme

URI: img_core_v400:Enzyme

classDiagram class Enzyme click Enzyme href "../Enzyme/" Enzyme : add_date Enzyme : cas_number Enzyme : comments Enzyme : ec_number Enzyme : enzyme_name Enzyme : parent_class Enzyme : rxn_desc Enzyme : systematic_name

Slots

Name	Cardinality and Range	Inheritance
ec_number	0..1 String	direct
enzyme_name	0..1 String	direct
systematic_name	0..1 String	direct
parent_class	0..1 String	direct
comments	0..1 String	direct
rxn_desc	0..1 String	direct
cas_number	0..1 String	direct
add_date	0..1 Datetime	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:Enzyme
native	img_core_v400:Enzyme

LinkML Source

Direct

name: enzyme
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  ec_number:
    name: ec_number
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_protein_catalyzes
    - biocyc_reaction
    - enzyme
    - enzyme_enz_aliases
    - enzyme_ext_links
    - enzyme_products
    - enzyme_substrates
    - enzyme_transferred
    - gene_biocyc_rxns
    - ko2ec
    range: string
    required: false
  enzyme_name:
    name: enzyme_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - enzyme
    - enzyme_transferred
    range: string
    required: false
  systematic_name:
    name: systematic_name
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_comp
    - biocyc_protein
    - enzyme
    - enzyme_transferred
    range: string
    required: false
  parent_class:
    name: parent_class
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - enzyme
    - enzyme_transferred
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - gene_sig_peptides
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    - taxon
    - taxon_prod_vw
    - taxon_replacements
    range: string
    required: false
  rxn_desc:
    name: rxn_desc
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - enzyme
    - enzyme_transferred
    range: string
    required: false
  cas_number:
    name: cas_number
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - compound
    - enzyme
    - enzyme_transferred
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - bcg_taxons
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - gene
    - gene_biocyc_rxns
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - paralog_group
    - pfam_clan
    - pfam_family
    - positional_cluster
    - property_step
    - reaction
    - scaffold
    - taxon
    - taxon_prod_vw
    - tigr_role
    - tigrfam
    range: datetime
    required: false

Induced

name: enzyme
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  ec_number:
    name: ec_number
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: ec_number
    owner: enzyme
    domain_of:
    - biocyc_protein_catalyzes
    - biocyc_reaction
    - enzyme
    - enzyme_enz_aliases
    - enzyme_ext_links
    - enzyme_products
    - enzyme_substrates
    - enzyme_transferred
    - gene_biocyc_rxns
    - ko2ec
    range: string
    required: false
  enzyme_name:
    name: enzyme_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: enzyme_name
    owner: enzyme
    domain_of:
    - enzyme
    - enzyme_transferred
    range: string
    required: false
  systematic_name:
    name: systematic_name
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: systematic_name
    owner: enzyme
    domain_of:
    - biocyc_comp
    - biocyc_protein
    - enzyme
    - enzyme_transferred
    range: string
    required: false
  parent_class:
    name: parent_class
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: parent_class
    owner: enzyme
    domain_of:
    - enzyme
    - enzyme_transferred
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: comments
    owner: enzyme
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - gene_sig_peptides
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    - taxon
    - taxon_prod_vw
    - taxon_replacements
    range: string
    required: false
  rxn_desc:
    name: rxn_desc
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: rxn_desc
    owner: enzyme
    domain_of:
    - enzyme
    - enzyme_transferred
    range: string
    required: false
  cas_number:
    name: cas_number
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: cas_number
    owner: enzyme
    domain_of:
    - compound
    - enzyme
    - enzyme_transferred
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: add_date
    owner: enzyme
    domain_of:
    - bcg_taxons
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - gene
    - gene_biocyc_rxns
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - paralog_group
    - pfam_clan
    - pfam_family
    - positional_cluster
    - property_step
    - reaction
    - scaffold
    - taxon
    - taxon_prod_vw
    - tigr_role
    - tigrfam
    range: datetime
    required: false