Class: GeneBiocycRxns
URI: img_core_v400:GeneBiocycRxns
classDiagram
class GeneBiocycRxns
click GeneBiocycRxns href "../GeneBiocycRxns/"
GeneBiocycRxns : add_date
GeneBiocycRxns : assign_basis
GeneBiocycRxns : biocyc_enzrxn
GeneBiocycRxns : biocyc_rxn
GeneBiocycRxns : common_name
GeneBiocycRxns : ec_number
GeneBiocycRxns : gene_oid
GeneBiocycRxns : scaffold
GeneBiocycRxns : taxon
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| gene_oid | 0..1 Integer |
direct | |
| biocyc_enzrxn | 0..1 String |
direct | |
| biocyc_rxn | 0..1 String |
direct | |
| ec_number | 0..1 String |
direct | |
| common_name | 0..1 String |
direct | |
| assign_basis | 0..1 String |
direct | |
| add_date | 0..1 Datetime |
direct | |
| taxon | 0..1 Integer |
direct | |
| scaffold | 0..1 Integer |
direct |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/jgi/img_core_v400
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | img_core_v400:GeneBiocycRxns |
| native | img_core_v400:GeneBiocycRxns |
LinkML Source
Direct
name: gene_biocyc_rxns
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
gene_oid:
name: gene_oid
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- actino_abc_genes
- delete_genes
- dt_ht_hits
- dt_img_gene_prot_pep_sample
- dt_phylum_dist_genes
- dt_scog_genes
- gene
- gene_aliases
- gene_biocyc_rxns
- gene_cathfam
- gene_cog_groups
- gene_essential_genes
- gene_exceptions
- gene_ext_links
- gene_feature_tags
- gene_frag_coords
- gene_go_terms
- gene_img_interpro_hits
- gene_ko_enzymes
- gene_ko_enzymes_new
- gene_ko_terms
- gene_kog_groups
- gene_notes
- gene_paralogs
- gene_pdb_xrefs
- gene_pfam_families
- gene_sig_peptides
- gene_smart
- gene_superfam
- gene_tigrfams
- gene_xref_families
- kp_pseudo
- merfs_gene_mapping
- mv_gene_tmhmm_stats
- tmp_genes
range: integer
required: false
biocyc_enzrxn:
name: biocyc_enzrxn
from_schema: https://w3id.org/jgi/img_core_v400
rank: 1000
domain_of:
- gene_biocyc_rxns
range: string
required: false
biocyc_rxn:
name: biocyc_rxn
from_schema: https://w3id.org/jgi/img_core_v400
rank: 1000
domain_of:
- gene_biocyc_rxns
range: string
required: false
ec_number:
name: ec_number
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- biocyc_protein_catalyzes
- biocyc_reaction
- enzyme
- enzyme_enz_aliases
- enzyme_ext_links
- enzyme_products
- enzyme_substrates
- enzyme_transferred
- gene_biocyc_rxns
- ko2ec
range: string
required: false
common_name:
name: common_name
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- biocyc_class
- biocyc_comp
- biocyc_enzrxn
- biocyc_pathway
- biocyc_protein
- biocyc_reaction
- compound
- gene_biocyc_rxns
range: string
required: false
assign_basis:
name: assign_basis
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- biocyc_enzrxn
- gene_biocyc_rxns
range: string
required: false
add_date:
name: add_date
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- bcg_taxons
- cog
- cog_function
- cog_species
- compound
- enzyme
- enzyme_transferred
- gene
- gene_biocyc_rxns
- genome_property
- go_graph_path
- go_term
- image_roi
- kegg_pathway
- km_image_roi
- ko_term
- kog
- kog_function
- paralog_group
- pfam_clan
- pfam_family
- positional_cluster
- property_step
- reaction
- scaffold
- taxon
- taxon_prod_vw
- tigr_role
- tigrfam
range: datetime
required: false
taxon:
name: taxon
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- cog_species
- dt_img_gene_prot_pep_sample
- dt_taxon_node_lite
- gene
- gene_biocyc_rxns
- gene_cathfam
- gene_cog_groups
- gene_img_interpro_hits
- gene_ko_enzymes
- gene_ko_enzymes_new
- gene_ko_terms
- gene_kog_groups
- gene_pfam_families
- gene_smart
- gene_superfam
- gene_tigrfams
- gene_xref_families
- kp_pseudo
- merfs_gene_mapping
- paralog_group
- scaffold
- scaffold_stats
- taxon_node_lite
range: integer
required: false
scaffold:
name: scaffold
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- gene
- gene_biocyc_rxns
- gene_cathfam
- gene_cog_groups
- gene_img_interpro_hits
- gene_ko_enzymes
- gene_ko_enzymes_new
- gene_ko_terms
- gene_kog_groups
- gene_pfam_families
- gene_smart
- gene_superfam
- gene_tigrfams
- gene_xref_families
- iso_plasmids
- kp_pseudo
range: integer
required: false
Induced
name: gene_biocyc_rxns
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
gene_oid:
name: gene_oid
from_schema: https://w3id.org/jgi/img_core_v400
alias: gene_oid
owner: gene_biocyc_rxns
domain_of:
- actino_abc_genes
- delete_genes
- dt_ht_hits
- dt_img_gene_prot_pep_sample
- dt_phylum_dist_genes
- dt_scog_genes
- gene
- gene_aliases
- gene_biocyc_rxns
- gene_cathfam
- gene_cog_groups
- gene_essential_genes
- gene_exceptions
- gene_ext_links
- gene_feature_tags
- gene_frag_coords
- gene_go_terms
- gene_img_interpro_hits
- gene_ko_enzymes
- gene_ko_enzymes_new
- gene_ko_terms
- gene_kog_groups
- gene_notes
- gene_paralogs
- gene_pdb_xrefs
- gene_pfam_families
- gene_sig_peptides
- gene_smart
- gene_superfam
- gene_tigrfams
- gene_xref_families
- kp_pseudo
- merfs_gene_mapping
- mv_gene_tmhmm_stats
- tmp_genes
range: integer
required: false
biocyc_enzrxn:
name: biocyc_enzrxn
from_schema: https://w3id.org/jgi/img_core_v400
rank: 1000
alias: biocyc_enzrxn
owner: gene_biocyc_rxns
domain_of:
- gene_biocyc_rxns
range: string
required: false
biocyc_rxn:
name: biocyc_rxn
from_schema: https://w3id.org/jgi/img_core_v400
rank: 1000
alias: biocyc_rxn
owner: gene_biocyc_rxns
domain_of:
- gene_biocyc_rxns
range: string
required: false
ec_number:
name: ec_number
from_schema: https://w3id.org/jgi/img_core_v400
alias: ec_number
owner: gene_biocyc_rxns
domain_of:
- biocyc_protein_catalyzes
- biocyc_reaction
- enzyme
- enzyme_enz_aliases
- enzyme_ext_links
- enzyme_products
- enzyme_substrates
- enzyme_transferred
- gene_biocyc_rxns
- ko2ec
range: string
required: false
common_name:
name: common_name
from_schema: https://w3id.org/jgi/img_core_v400
alias: common_name
owner: gene_biocyc_rxns
domain_of:
- biocyc_class
- biocyc_comp
- biocyc_enzrxn
- biocyc_pathway
- biocyc_protein
- biocyc_reaction
- compound
- gene_biocyc_rxns
range: string
required: false
assign_basis:
name: assign_basis
from_schema: https://w3id.org/jgi/img_core_v400
alias: assign_basis
owner: gene_biocyc_rxns
domain_of:
- biocyc_enzrxn
- gene_biocyc_rxns
range: string
required: false
add_date:
name: add_date
from_schema: https://w3id.org/jgi/img_core_v400
alias: add_date
owner: gene_biocyc_rxns
domain_of:
- bcg_taxons
- cog
- cog_function
- cog_species
- compound
- enzyme
- enzyme_transferred
- gene
- gene_biocyc_rxns
- genome_property
- go_graph_path
- go_term
- image_roi
- kegg_pathway
- km_image_roi
- ko_term
- kog
- kog_function
- paralog_group
- pfam_clan
- pfam_family
- positional_cluster
- property_step
- reaction
- scaffold
- taxon
- taxon_prod_vw
- tigr_role
- tigrfam
range: datetime
required: false
taxon:
name: taxon
from_schema: https://w3id.org/jgi/img_core_v400
alias: taxon
owner: gene_biocyc_rxns
domain_of:
- cog_species
- dt_img_gene_prot_pep_sample
- dt_taxon_node_lite
- gene
- gene_biocyc_rxns
- gene_cathfam
- gene_cog_groups
- gene_img_interpro_hits
- gene_ko_enzymes
- gene_ko_enzymes_new
- gene_ko_terms
- gene_kog_groups
- gene_pfam_families
- gene_smart
- gene_superfam
- gene_tigrfams
- gene_xref_families
- kp_pseudo
- merfs_gene_mapping
- paralog_group
- scaffold
- scaffold_stats
- taxon_node_lite
range: integer
required: false
scaffold:
name: scaffold
from_schema: https://w3id.org/jgi/img_core_v400
alias: scaffold
owner: gene_biocyc_rxns
domain_of:
- gene
- gene_biocyc_rxns
- gene_cathfam
- gene_cog_groups
- gene_img_interpro_hits
- gene_ko_enzymes
- gene_ko_enzymes_new
- gene_ko_terms
- gene_kog_groups
- gene_pfam_families
- gene_smart
- gene_superfam
- gene_tigrfams
- gene_xref_families
- iso_plasmids
- kp_pseudo
range: integer
required: false