Skip to content

Class: GeneExceptions

URI: img_core_v400:GeneExceptions

classDiagram class GeneExceptions click GeneExceptions href "../GeneExceptions/" GeneExceptions : exception GeneExceptions : gb_tag GeneExceptions : gene_oid

Slots

Name Cardinality and Range Description Inheritance
gene_oid 0..1
Integer		 direct
gb_tag 0..1
String		 direct
exception 0..1
String		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type Mapped Value
self img_core_v400:GeneExceptions
native img_core_v400:GeneExceptions

LinkML Source

Direct

name: gene_exceptions
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  gb_tag:
    name: gb_tag
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_exceptions
    range: string
    required: false
  exception:
    name: exception
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_exceptions
    range: string
    required: false

Induced

name: gene_exceptions
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: gene_oid
    owner: gene_exceptions
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  gb_tag:
    name: gb_tag
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: gb_tag
    owner: gene_exceptions
    domain_of:
    - gene_exceptions
    range: string
    required: false
  exception:
    name: exception
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: exception
    owner: gene_exceptions
    domain_of:
    - gene_exceptions
    range: string
    required: false