Class: GeneGoTerms

URI: img_core_v400:GeneGoTerms

classDiagram class GeneGoTerms click GeneGoTerms href "../GeneGoTerms/" GeneGoTerms : gene_oid GeneGoTerms : go_evidence GeneGoTerms : go_id GeneGoTerms : go_type GeneGoTerms : reference GeneGoTerms : xref

Slots

Name	Cardinality and Range	Inheritance
gene_oid	0..1 Integer	direct
go_type	0..1 String	direct
go_id	0..1 String	direct
go_evidence	0..1 String	direct
reference	0..1 String	direct
xref	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:GeneGoTerms
native	img_core_v400:GeneGoTerms

LinkML Source

Direct

name: gene_go_terms
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  go_type:
    name: go_type
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_go_terms
    - go_term
    range: string
    required: false
  go_id:
    name: go_id
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_go_terms
    - go_term
    - go_term_parents
    - go_term_synonyms
    - ko2go
    - pfam2go
    range: string
    required: false
  go_evidence:
    name: go_evidence
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_go_terms
    range: string
    required: false
  reference:
    name: reference
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_go_terms
    range: string
    required: false
  xref:
    name: xref
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - gene_ext_links
    - gene_go_terms
    - gene_pdb_xrefs
    - gene_xref_families
    range: string
    required: false

Induced

name: gene_go_terms
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: gene_oid
    owner: gene_go_terms
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  go_type:
    name: go_type
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: go_type
    owner: gene_go_terms
    domain_of:
    - gene_go_terms
    - go_term
    range: string
    required: false
  go_id:
    name: go_id
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: go_id
    owner: gene_go_terms
    domain_of:
    - gene_go_terms
    - go_term
    - go_term_parents
    - go_term_synonyms
    - ko2go
    - pfam2go
    range: string
    required: false
  go_evidence:
    name: go_evidence
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: go_evidence
    owner: gene_go_terms
    domain_of:
    - gene_go_terms
    range: string
    required: false
  reference:
    name: reference
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: reference
    owner: gene_go_terms
    domain_of:
    - gene_go_terms
    range: string
    required: false
  xref:
    name: xref
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: xref
    owner: gene_go_terms
    domain_of:
    - gene_ext_links
    - gene_go_terms
    - gene_pdb_xrefs
    - gene_xref_families
    range: string
    required: false