Class: GeneImgInterproHits

URI: img_core_v400:GeneImgInterproHits

classDiagram class GeneImgInterproHits click GeneImgInterproHits href "../GeneImgInterproHits/" GeneImgInterproHits : domaindb GeneImgInterproHits : domaindesc GeneImgInterproHits : domainid GeneImgInterproHits : gene_oid GeneImgInterproHits : go_info GeneImgInterproHits : iprdesc GeneImgInterproHits : iprid GeneImgInterproHits : length GeneImgInterproHits : scaffold GeneImgInterproHits --> "0..1" Taxon : scaffold click Taxon href "../Taxon/" GeneImgInterproHits : sfcount GeneImgInterproHits : sfends GeneImgInterproHits : sfscores GeneImgInterproHits : sfstarts GeneImgInterproHits : taxon GeneImgInterproHits : url

Slots

Name	Cardinality and Range	Description	Inheritance
gene_oid	0..1 Integer		direct
length	0..1 Integer		direct
domaindb	0..1 String		direct
domainid	0..1 String		direct
domaindesc	0..1 String		direct
sfcount	0..1 Integer		direct
sfstarts	0..1 Integer		direct
sfends	0..1 Integer		direct
sfscores	0..1 Integer		direct
iprid	0..1 String		direct
iprdesc	0..1 String		direct
go_info	0..1 String		direct
url	0..1 String		direct
scaffold	0..1 Taxon	Foreign key to taxon	direct
taxon	0..1 Integer		direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:GeneImgInterproHits
native	img_core_v400:GeneImgInterproHits

LinkML Source

Direct

name: gene_img_interpro_hits
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  length:
    name: length
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_img_interpro_hits
    range: integer
    required: false
  domaindb:
    name: domaindb
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_img_interpro_hits
    range: string
    required: false
  domainid:
    name: domainid
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_img_interpro_hits
    range: string
    required: false
  domaindesc:
    name: domaindesc
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_img_interpro_hits
    range: string
    required: false
  sfcount:
    name: sfcount
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_img_interpro_hits
    range: integer
    required: false
  sfstarts:
    name: sfstarts
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_img_interpro_hits
    - gene_tigrfams
    range: integer
    required: false
  sfends:
    name: sfends
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_img_interpro_hits
    range: integer
    required: false
  sfscores:
    name: sfscores
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_img_interpro_hits
    - gene_tigrfams
    range: integer
    required: false
  iprid:
    name: iprid
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_img_interpro_hits
    range: string
    required: false
  iprdesc:
    name: iprdesc
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_img_interpro_hits
    range: string
    required: false
  go_info:
    name: go_info
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_img_interpro_hits
    range: string
    required: false
  url:
    name: url
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_img_interpro_hits
    range: string
    required: false
  scaffold:
    name: scaffold
    description: Foreign key to taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - iso_plasmids
    - kp_pseudo
    range: taxon
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - cog_species
    - dt_img_gene_prot_pep_sample
    - dt_taxon_node_lite
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - paralog_group
    - scaffold
    - scaffold_stats
    - taxon_node_lite
    range: integer
    required: false

Induced

name: gene_img_interpro_hits
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: gene_oid
    owner: gene_img_interpro_hits
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  length:
    name: length
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: length
    owner: gene_img_interpro_hits
    domain_of:
    - gene_img_interpro_hits
    range: integer
    required: false
  domaindb:
    name: domaindb
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: domaindb
    owner: gene_img_interpro_hits
    domain_of:
    - gene_img_interpro_hits
    range: string
    required: false
  domainid:
    name: domainid
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: domainid
    owner: gene_img_interpro_hits
    domain_of:
    - gene_img_interpro_hits
    range: string
    required: false
  domaindesc:
    name: domaindesc
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: domaindesc
    owner: gene_img_interpro_hits
    domain_of:
    - gene_img_interpro_hits
    range: string
    required: false
  sfcount:
    name: sfcount
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: sfcount
    owner: gene_img_interpro_hits
    domain_of:
    - gene_img_interpro_hits
    range: integer
    required: false
  sfstarts:
    name: sfstarts
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: sfstarts
    owner: gene_img_interpro_hits
    domain_of:
    - gene_img_interpro_hits
    - gene_tigrfams
    range: integer
    required: false
  sfends:
    name: sfends
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: sfends
    owner: gene_img_interpro_hits
    domain_of:
    - gene_img_interpro_hits
    range: integer
    required: false
  sfscores:
    name: sfscores
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: sfscores
    owner: gene_img_interpro_hits
    domain_of:
    - gene_img_interpro_hits
    - gene_tigrfams
    range: integer
    required: false
  iprid:
    name: iprid
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: iprid
    owner: gene_img_interpro_hits
    domain_of:
    - gene_img_interpro_hits
    range: string
    required: false
  iprdesc:
    name: iprdesc
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: iprdesc
    owner: gene_img_interpro_hits
    domain_of:
    - gene_img_interpro_hits
    range: string
    required: false
  go_info:
    name: go_info
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: go_info
    owner: gene_img_interpro_hits
    domain_of:
    - gene_img_interpro_hits
    range: string
    required: false
  url:
    name: url
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: url
    owner: gene_img_interpro_hits
    domain_of:
    - gene_img_interpro_hits
    range: string
    required: false
  scaffold:
    name: scaffold
    description: Foreign key to taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: scaffold
    owner: gene_img_interpro_hits
    domain_of:
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - iso_plasmids
    - kp_pseudo
    range: taxon
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: taxon
    owner: gene_img_interpro_hits
    domain_of:
    - cog_species
    - dt_img_gene_prot_pep_sample
    - dt_taxon_node_lite
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - paralog_group
    - scaffold
    - scaffold_stats
    - taxon_node_lite
    range: integer
    required: false