Class: GeneKoEnzymesNew
URI: img_core_v400:GeneKoEnzymesNew
classDiagram
class GeneKoEnzymesNew
click GeneKoEnzymesNew href "../GeneKoEnzymesNew/"
GeneKoEnzymesNew : enzymes
GeneKoEnzymesNew : gene_oid
GeneKoEnzymesNew : ko_id
GeneKoEnzymesNew : scaffold
GeneKoEnzymesNew : taxon
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| gene_oid | 0..1 Integer |
direct | |
| enzymes | 0..1 String |
direct | |
| ko_id | 0..1 String |
direct | |
| taxon | 0..1 Integer |
direct | |
| scaffold | 0..1 Integer |
direct |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/jgi/img_core_v400
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | img_core_v400:GeneKoEnzymesNew |
| native | img_core_v400:GeneKoEnzymesNew |
LinkML Source
Direct
name: gene_ko_enzymes_new
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
gene_oid:
name: gene_oid
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- actino_abc_genes
- delete_genes
- dt_ht_hits
- dt_img_gene_prot_pep_sample
- dt_phylum_dist_genes
- dt_scog_genes
- gene
- gene_aliases
- gene_biocyc_rxns
- gene_cathfam
- gene_cog_groups
- gene_essential_genes
- gene_exceptions
- gene_ext_links
- gene_feature_tags
- gene_frag_coords
- gene_go_terms
- gene_img_interpro_hits
- gene_ko_enzymes
- gene_ko_enzymes_new
- gene_ko_terms
- gene_kog_groups
- gene_notes
- gene_paralogs
- gene_pdb_xrefs
- gene_pfam_families
- gene_sig_peptides
- gene_smart
- gene_superfam
- gene_tigrfams
- gene_xref_families
- kp_pseudo
- merfs_gene_mapping
- mv_gene_tmhmm_stats
- tmp_genes
range: integer
required: false
enzymes:
name: enzymes
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- gene_ko_enzymes
- gene_ko_enzymes_new
- image_roi_enzymes
- ko_term_enzymes
- reaction_enzymes
- tigrfam_enzymes
range: string
required: false
ko_id:
name: ko_id
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- dt_ko
- dt_ko_ec_cog_pfam
- gene_ko_enzymes
- gene_ko_enzymes_new
- ko2cog
- ko2ec
- ko2go
- ko2module
- ko2pathway
- ko2reaction
- ko2tc
- ko_term
- ko_term_classes
- ko_term_cogs
- ko_term_enzymes
- ko_term_go_ids
- ko_term_modules
- ko_term_pathways
- ko_term_reactions
- ko_term_tc_families
range: string
required: false
taxon:
name: taxon
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- cog_species
- dt_img_gene_prot_pep_sample
- dt_taxon_node_lite
- gene
- gene_biocyc_rxns
- gene_cathfam
- gene_cog_groups
- gene_img_interpro_hits
- gene_ko_enzymes
- gene_ko_enzymes_new
- gene_ko_terms
- gene_kog_groups
- gene_pfam_families
- gene_smart
- gene_superfam
- gene_tigrfams
- gene_xref_families
- kp_pseudo
- merfs_gene_mapping
- paralog_group
- scaffold
- scaffold_stats
- taxon_node_lite
range: integer
required: false
scaffold:
name: scaffold
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- gene
- gene_biocyc_rxns
- gene_cathfam
- gene_cog_groups
- gene_img_interpro_hits
- gene_ko_enzymes
- gene_ko_enzymes_new
- gene_ko_terms
- gene_kog_groups
- gene_pfam_families
- gene_smart
- gene_superfam
- gene_tigrfams
- gene_xref_families
- iso_plasmids
- kp_pseudo
range: integer
required: false
Induced
name: gene_ko_enzymes_new
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
gene_oid:
name: gene_oid
from_schema: https://w3id.org/jgi/img_core_v400
alias: gene_oid
owner: gene_ko_enzymes_new
domain_of:
- actino_abc_genes
- delete_genes
- dt_ht_hits
- dt_img_gene_prot_pep_sample
- dt_phylum_dist_genes
- dt_scog_genes
- gene
- gene_aliases
- gene_biocyc_rxns
- gene_cathfam
- gene_cog_groups
- gene_essential_genes
- gene_exceptions
- gene_ext_links
- gene_feature_tags
- gene_frag_coords
- gene_go_terms
- gene_img_interpro_hits
- gene_ko_enzymes
- gene_ko_enzymes_new
- gene_ko_terms
- gene_kog_groups
- gene_notes
- gene_paralogs
- gene_pdb_xrefs
- gene_pfam_families
- gene_sig_peptides
- gene_smart
- gene_superfam
- gene_tigrfams
- gene_xref_families
- kp_pseudo
- merfs_gene_mapping
- mv_gene_tmhmm_stats
- tmp_genes
range: integer
required: false
enzymes:
name: enzymes
from_schema: https://w3id.org/jgi/img_core_v400
alias: enzymes
owner: gene_ko_enzymes_new
domain_of:
- gene_ko_enzymes
- gene_ko_enzymes_new
- image_roi_enzymes
- ko_term_enzymes
- reaction_enzymes
- tigrfam_enzymes
range: string
required: false
ko_id:
name: ko_id
from_schema: https://w3id.org/jgi/img_core_v400
alias: ko_id
owner: gene_ko_enzymes_new
domain_of:
- dt_ko
- dt_ko_ec_cog_pfam
- gene_ko_enzymes
- gene_ko_enzymes_new
- ko2cog
- ko2ec
- ko2go
- ko2module
- ko2pathway
- ko2reaction
- ko2tc
- ko_term
- ko_term_classes
- ko_term_cogs
- ko_term_enzymes
- ko_term_go_ids
- ko_term_modules
- ko_term_pathways
- ko_term_reactions
- ko_term_tc_families
range: string
required: false
taxon:
name: taxon
from_schema: https://w3id.org/jgi/img_core_v400
alias: taxon
owner: gene_ko_enzymes_new
domain_of:
- cog_species
- dt_img_gene_prot_pep_sample
- dt_taxon_node_lite
- gene
- gene_biocyc_rxns
- gene_cathfam
- gene_cog_groups
- gene_img_interpro_hits
- gene_ko_enzymes
- gene_ko_enzymes_new
- gene_ko_terms
- gene_kog_groups
- gene_pfam_families
- gene_smart
- gene_superfam
- gene_tigrfams
- gene_xref_families
- kp_pseudo
- merfs_gene_mapping
- paralog_group
- scaffold
- scaffold_stats
- taxon_node_lite
range: integer
required: false
scaffold:
name: scaffold
from_schema: https://w3id.org/jgi/img_core_v400
alias: scaffold
owner: gene_ko_enzymes_new
domain_of:
- gene
- gene_biocyc_rxns
- gene_cathfam
- gene_cog_groups
- gene_img_interpro_hits
- gene_ko_enzymes
- gene_ko_enzymes_new
- gene_ko_terms
- gene_kog_groups
- gene_pfam_families
- gene_smart
- gene_superfam
- gene_tigrfams
- gene_xref_families
- iso_plasmids
- kp_pseudo
range: integer
required: false