Class: GeneParalogs

URI: img_core_v400:GeneParalogs

classDiagram class GeneParalogs click GeneParalogs href "../GeneParalogs/" GeneParalogs : bit_score GeneParalogs : evalue GeneParalogs : gene_oid GeneParalogs : paralog GeneParalogs : percent_identity GeneParalogs : query_end GeneParalogs : query_start GeneParalogs : subj_end GeneParalogs : subj_start

Slots

Name	Cardinality and Range	Inheritance
gene_oid	0..1 Integer	direct
paralog	0..1 Integer	direct
percent_identity	0..1 Float	direct
evalue	0..1 Float	direct
bit_score	0..1 Float	direct
subj_start	0..1 Integer	direct
subj_end	0..1 Integer	direct
query_start	0..1 Integer	direct
query_end	0..1 Integer	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:GeneParalogs
native	img_core_v400:GeneParalogs

LinkML Source

Direct

name: gene_paralogs
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  paralog:
    name: paralog
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_paralogs
    range: integer
    required: false
  percent_identity:
    name: percent_identity
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_phylum_dist_genes
    - gene_cathfam
    - gene_cog_groups
    - gene_ko_terms
    - gene_kog_groups
    - gene_paralogs
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    range: float
    required: false
  evalue:
    name: evalue
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - gene_cathfam
    - gene_cog_groups
    - gene_ko_terms
    - gene_kog_groups
    - gene_paralogs
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    range: float
    required: false
  bit_score:
    name: bit_score
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_phylum_dist_genes
    - gene_cathfam
    - gene_cog_groups
    - gene_ko_terms
    - gene_kog_groups
    - gene_paralogs
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    range: float
    required: false
  subj_start:
    name: subj_start
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - gene_cog_groups
    - gene_ko_terms
    - gene_kog_groups
    - gene_paralogs
    - gene_pfam_families
    range: integer
    required: false
  subj_end:
    name: subj_end
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - gene_cog_groups
    - gene_ko_terms
    - gene_kog_groups
    - gene_paralogs
    - gene_pfam_families
    range: integer
    required: false
  query_start:
    name: query_start
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - gene_cathfam
    - gene_cog_groups
    - gene_ko_terms
    - gene_kog_groups
    - gene_paralogs
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    range: integer
    required: false
  query_end:
    name: query_end
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - gene_cathfam
    - gene_cog_groups
    - gene_ko_terms
    - gene_kog_groups
    - gene_paralogs
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    range: integer
    required: false

Induced

name: gene_paralogs
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: gene_oid
    owner: gene_paralogs
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  paralog:
    name: paralog
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: paralog
    owner: gene_paralogs
    domain_of:
    - gene_paralogs
    range: integer
    required: false
  percent_identity:
    name: percent_identity
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: percent_identity
    owner: gene_paralogs
    domain_of:
    - dt_phylum_dist_genes
    - gene_cathfam
    - gene_cog_groups
    - gene_ko_terms
    - gene_kog_groups
    - gene_paralogs
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    range: float
    required: false
  evalue:
    name: evalue
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: evalue
    owner: gene_paralogs
    domain_of:
    - gene_cathfam
    - gene_cog_groups
    - gene_ko_terms
    - gene_kog_groups
    - gene_paralogs
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    range: float
    required: false
  bit_score:
    name: bit_score
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: bit_score
    owner: gene_paralogs
    domain_of:
    - dt_phylum_dist_genes
    - gene_cathfam
    - gene_cog_groups
    - gene_ko_terms
    - gene_kog_groups
    - gene_paralogs
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    range: float
    required: false
  subj_start:
    name: subj_start
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: subj_start
    owner: gene_paralogs
    domain_of:
    - gene_cog_groups
    - gene_ko_terms
    - gene_kog_groups
    - gene_paralogs
    - gene_pfam_families
    range: integer
    required: false
  subj_end:
    name: subj_end
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: subj_end
    owner: gene_paralogs
    domain_of:
    - gene_cog_groups
    - gene_ko_terms
    - gene_kog_groups
    - gene_paralogs
    - gene_pfam_families
    range: integer
    required: false
  query_start:
    name: query_start
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: query_start
    owner: gene_paralogs
    domain_of:
    - gene_cathfam
    - gene_cog_groups
    - gene_ko_terms
    - gene_kog_groups
    - gene_paralogs
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    range: integer
    required: false
  query_end:
    name: query_end
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: query_end
    owner: gene_paralogs
    domain_of:
    - gene_cathfam
    - gene_cog_groups
    - gene_ko_terms
    - gene_kog_groups
    - gene_paralogs
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    range: integer
    required: false