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Class: GenePdbXrefs

URI: img_core_v400:GenePdbXrefs

classDiagram class GenePdbXrefs click GenePdbXrefs href "../GenePdbXrefs/" GenePdbXrefs : db_name GenePdbXrefs --> "0..1" DbSource : db_name click DbSource href "../DbSource/" GenePdbXrefs : gene_oid GenePdbXrefs : id GenePdbXrefs : xref

Slots

Name Cardinality and Range Description Inheritance
gene_oid 0..1
Integer		 direct
db_name 0..1
DbSource		 Foreign key to db_source direct
id 0..1
String		 direct
xref 0..1
String		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type Mapped Value
self img_core_v400:GenePdbXrefs
native img_core_v400:GenePdbXrefs

LinkML Source

Direct

name: gene_pdb_xrefs
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  db_name:
    name: db_name
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_comp_ext_links
    - biocyc_enzrxn_ext_links
    - biocyc_pathway_ext_links
    - biocyc_protein_ext_links
    - biocyc_reaction_ext_links
    - compound_ext_links
    - enzyme_ext_links
    - gene_cathfam
    - gene_ext_links
    - gene_pdb_xrefs
    - gene_smart
    - gene_superfam
    - gene_xref_families
    - pfam_family_ext_links
    - reaction_ext_links
    - scaffold_ext_links
    - taxon_ext_links
    range: db_source
    required: false
  id:
    name: id
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_comp_ext_links
    - biocyc_enzrxn_ext_links
    - biocyc_pathway_ext_links
    - biocyc_protein_ext_links
    - biocyc_reaction_ext_links
    - compound_ext_links
    - enzyme_ext_links
    - gene_cathfam
    - gene_ext_links
    - gene_pdb_xrefs
    - gene_smart
    - gene_superfam
    - gene_xref_families
    - pfam_family_ext_links
    - reaction_ext_links
    - scaffold_ext_links
    - taxon_ext_links
    range: string
    required: false
  xref:
    name: xref
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - gene_ext_links
    - gene_go_terms
    - gene_pdb_xrefs
    - gene_xref_families
    range: string
    required: false

Induced

name: gene_pdb_xrefs
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: gene_oid
    owner: gene_pdb_xrefs
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  db_name:
    name: db_name
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: db_name
    owner: gene_pdb_xrefs
    domain_of:
    - biocyc_comp_ext_links
    - biocyc_enzrxn_ext_links
    - biocyc_pathway_ext_links
    - biocyc_protein_ext_links
    - biocyc_reaction_ext_links
    - compound_ext_links
    - enzyme_ext_links
    - gene_cathfam
    - gene_ext_links
    - gene_pdb_xrefs
    - gene_smart
    - gene_superfam
    - gene_xref_families
    - pfam_family_ext_links
    - reaction_ext_links
    - scaffold_ext_links
    - taxon_ext_links
    range: db_source
    required: false
  id:
    name: id
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: id
    owner: gene_pdb_xrefs
    domain_of:
    - biocyc_comp_ext_links
    - biocyc_enzrxn_ext_links
    - biocyc_pathway_ext_links
    - biocyc_protein_ext_links
    - biocyc_reaction_ext_links
    - compound_ext_links
    - enzyme_ext_links
    - gene_cathfam
    - gene_ext_links
    - gene_pdb_xrefs
    - gene_smart
    - gene_superfam
    - gene_xref_families
    - pfam_family_ext_links
    - reaction_ext_links
    - scaffold_ext_links
    - taxon_ext_links
    range: string
    required: false
  xref:
    name: xref
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: xref
    owner: gene_pdb_xrefs
    domain_of:
    - gene_ext_links
    - gene_go_terms
    - gene_pdb_xrefs
    - gene_xref_families
    range: string
    required: false