Class: GeneSigPeptides

URI: img_core_v400:GeneSigPeptides

classDiagram class GeneSigPeptides click GeneSigPeptides href "../GeneSigPeptides/" GeneSigPeptides : comments GeneSigPeptides : end_coord GeneSigPeptides : feature_type GeneSigPeptides : gene_oid GeneSigPeptides : start_coord

Slots

Name	Cardinality and Range	Inheritance
gene_oid	0..1 Integer	direct
feature_type	0..1 String	direct
start_coord	0..1 Integer	direct
end_coord	0..1 Integer	direct
comments	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:GeneSigPeptides
native	img_core_v400:GeneSigPeptides

LinkML Source

Direct

name: gene_sig_peptides
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  feature_type:
    name: feature_type
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - gene_sig_peptides
    range: string
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - dt_intergenic
    - gene
    - gene_frag_coords
    - gene_sig_peptides
    - kp_pseudo
    - scaffold_nx_feature
    - scaffold_repeats
    - taxon_crispr_summary
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - dt_intergenic
    - gene
    - gene_frag_coords
    - gene_sig_peptides
    - kp_pseudo
    - scaffold_nx_feature
    - scaffold_repeats
    - taxon_crispr_summary
    range: integer
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - gene_sig_peptides
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    - taxon
    - taxon_prod_vw
    - taxon_replacements
    range: string
    required: false

Induced

name: gene_sig_peptides
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: gene_oid
    owner: gene_sig_peptides
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  feature_type:
    name: feature_type
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: feature_type
    owner: gene_sig_peptides
    domain_of:
    - gene_sig_peptides
    range: string
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: start_coord
    owner: gene_sig_peptides
    domain_of:
    - alt_transcript
    - dt_intergenic
    - gene
    - gene_frag_coords
    - gene_sig_peptides
    - kp_pseudo
    - scaffold_nx_feature
    - scaffold_repeats
    - taxon_crispr_summary
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: end_coord
    owner: gene_sig_peptides
    domain_of:
    - alt_transcript
    - dt_intergenic
    - gene
    - gene_frag_coords
    - gene_sig_peptides
    - kp_pseudo
    - scaffold_nx_feature
    - scaffold_repeats
    - taxon_crispr_summary
    range: integer
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: comments
    owner: gene_sig_peptides
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - gene_sig_peptides
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    - taxon
    - taxon_prod_vw
    - taxon_replacements
    range: string
    required: false