Class: GenomeProperty

URI: img_core_v400:GenomeProperty

classDiagram class GenomeProperty click GenomeProperty href "../GenomeProperty/" GenomeProperty : add_date GenomeProperty : description GenomeProperty : name GenomeProperty : prop_accession GenomeProperty : threshold GenomeProperty : type

Slots

Name	Cardinality and Range	Inheritance
prop_accession	0..1 String	direct
name	0..1 String	direct
description	0..1 String	direct
threshold	0..1 Integer	direct
type	0..1 String	direct
add_date	0..1 Datetime	direct

Usages

used by	used in	type	used
GenomePropertyParents	prop_accession	range	GenomeProperty
GenomePropertyParents	parents	range	GenomeProperty
PfamFamilyGenomeProperties	property	range	GenomeProperty
PropertyStep	GenomeProperty	range	GenomeProperty
TigrfamGenomeProperties	property	range	GenomeProperty

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:GenomeProperty
native	img_core_v400:GenomeProperty

LinkML Source

Direct

name: genome_property
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  prop_accession:
    name: prop_accession
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - genome_property
    - genome_property_parents
    range: string
    required: false
  name:
    name: name
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - cog2014
    - cogfunc2014
    - db_source
    - dt_cog
    - dt_img_term
    - dt_ko
    - dt_pfam
    - dt_tfam
    - exclude_func
    - genome_property
    - interpro
    - pfam_clan
    - pfam_dead
    - pfam_family
    - property_step
    - superfamily
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - cath_funfam
    - cog
    - gene
    - gene_xref_families
    - genome_property
    - kegg_pathway
    - kog
    - pfam_clan
    - pfam_family
    - smart
    - superfamily
    - yesnocv
    range: string
    required: false
  threshold:
    name: threshold
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - genome_property
    range: integer
    required: false
  type:
    name: type
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - accession_types
    - genome_property
    - interpro
    - pfam_family
    - scaffold_repeats
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - bcg_taxons
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - gene
    - gene_biocyc_rxns
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - paralog_group
    - pfam_clan
    - pfam_family
    - positional_cluster
    - property_step
    - reaction
    - scaffold
    - taxon
    - taxon_prod_vw
    - tigr_role
    - tigrfam
    range: datetime
    required: false

Induced

name: genome_property
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  prop_accession:
    name: prop_accession
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: prop_accession
    owner: genome_property
    domain_of:
    - genome_property
    - genome_property_parents
    range: string
    required: false
  name:
    name: name
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: name
    owner: genome_property
    domain_of:
    - alt_transcript
    - cog2014
    - cogfunc2014
    - db_source
    - dt_cog
    - dt_img_term
    - dt_ko
    - dt_pfam
    - dt_tfam
    - exclude_func
    - genome_property
    - interpro
    - pfam_clan
    - pfam_dead
    - pfam_family
    - property_step
    - superfamily
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: description
    owner: genome_property
    domain_of:
    - alt_transcript
    - cath_funfam
    - cog
    - gene
    - gene_xref_families
    - genome_property
    - kegg_pathway
    - kog
    - pfam_clan
    - pfam_family
    - smart
    - superfamily
    - yesnocv
    range: string
    required: false
  threshold:
    name: threshold
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: threshold
    owner: genome_property
    domain_of:
    - genome_property
    range: integer
    required: false
  type:
    name: type
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: type
    owner: genome_property
    domain_of:
    - accession_types
    - genome_property
    - interpro
    - pfam_family
    - scaffold_repeats
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: add_date
    owner: genome_property
    domain_of:
    - bcg_taxons
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - gene
    - gene_biocyc_rxns
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - paralog_group
    - pfam_clan
    - pfam_family
    - positional_cluster
    - property_step
    - reaction
    - scaffold
    - taxon
    - taxon_prod_vw
    - tigr_role
    - tigrfam
    range: datetime
    required: false