Class: GoTerm

URI: img_core_v400:GoTerm

classDiagram class GoTerm click GoTerm href "../GoTerm/" GoTerm : add_date GoTerm : comments GoTerm : db_source GoTerm --> "0..1" DbSource : db_source click DbSource href "../DbSource/" GoTerm : definition GoTerm : go_id GoTerm : go_term GoTerm : go_type GoTerm : is_obsolete GoTerm --> "0..1" Yesnocv : is_obsolete click Yesnocv href "../Yesnocv/" GoTerm : is_root GoTerm --> "0..1" Yesnocv : is_root click Yesnocv href "../Yesnocv/"

Slots

Name	Cardinality and Range	Description	Inheritance
go_id	0..1 String		direct
go_term	0..1 String		direct
go_type	0..1 String		direct
definition	0..1 String		direct
comments	0..1 String		direct
is_root	0..1 Yesnocv	Foreign key to yesnocv	direct
is_obsolete	0..1 Yesnocv	Foreign key to yesnocv	direct
db_source	0..1 DbSource	Foreign key to db_source	direct
add_date	0..1 Datetime		direct

Usages

used by	used in	type	used
GoGraphPath	term_1	range	GoTerm
GoGraphPath	term_2	range	GoTerm
GoTermParents	go_id	range	GoTerm
GoTermParents	parent	range	GoTerm
GoTermSynonyms	go_id	range	GoTerm
KoTermGoIds	go_ids	range	GoTerm

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:GoTerm
native	img_core_v400:GoTerm

LinkML Source

Direct

name: go_term
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  go_id:
    name: go_id
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - gene_go_terms
    - go_term
    - go_term_parents
    - go_term_synonyms
    - ko2go
    - pfam2go
    range: string
    required: false
  go_term:
    name: go_term
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - go_term
    - pfam2go
    range: string
    required: false
  go_type:
    name: go_type
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - gene_go_terms
    - go_term
    range: string
    required: false
  definition:
    name: definition
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - cog_function
    - go_term
    - img_orf_type
    - kegg_module
    - ko_term
    - kog_function
    - smart
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - gene_sig_peptides
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    - taxon
    - taxon_prod_vw
    - taxon_replacements
    range: string
    required: false
  is_root:
    name: is_root
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - go_term
    range: yesnocv
    required: false
  is_obsolete:
    name: is_obsolete
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - go_term
    range: yesnocv
    required: false
  db_source:
    name: db_source
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_comp
    - cog
    - compound
    - go_term
    - kegg_pathway
    - kog
    - pfam_family
    - scaffold
    range: db_source
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - bcg_taxons
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - gene
    - gene_biocyc_rxns
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - paralog_group
    - pfam_clan
    - pfam_family
    - positional_cluster
    - property_step
    - reaction
    - scaffold
    - taxon
    - taxon_prod_vw
    - tigr_role
    - tigrfam
    range: datetime
    required: false

Induced

name: go_term
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  go_id:
    name: go_id
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: go_id
    owner: go_term
    domain_of:
    - gene_go_terms
    - go_term
    - go_term_parents
    - go_term_synonyms
    - ko2go
    - pfam2go
    range: string
    required: false
  go_term:
    name: go_term
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: go_term
    owner: go_term
    domain_of:
    - go_term
    - pfam2go
    range: string
    required: false
  go_type:
    name: go_type
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: go_type
    owner: go_term
    domain_of:
    - gene_go_terms
    - go_term
    range: string
    required: false
  definition:
    name: definition
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: definition
    owner: go_term
    domain_of:
    - cog_function
    - go_term
    - img_orf_type
    - kegg_module
    - ko_term
    - kog_function
    - smart
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: comments
    owner: go_term
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - gene_sig_peptides
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    - taxon
    - taxon_prod_vw
    - taxon_replacements
    range: string
    required: false
  is_root:
    name: is_root
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: is_root
    owner: go_term
    domain_of:
    - go_term
    range: yesnocv
    required: false
  is_obsolete:
    name: is_obsolete
    description: Foreign key to yesnocv
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: is_obsolete
    owner: go_term
    domain_of:
    - go_term
    range: yesnocv
    required: false
  db_source:
    name: db_source
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: db_source
    owner: go_term
    domain_of:
    - biocyc_comp
    - cog
    - compound
    - go_term
    - kegg_pathway
    - kog
    - pfam_family
    - scaffold
    range: db_source
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: add_date
    owner: go_term
    domain_of:
    - bcg_taxons
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - gene
    - gene_biocyc_rxns
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - paralog_group
    - pfam_clan
    - pfam_family
    - positional_cluster
    - property_step
    - reaction
    - scaffold
    - taxon
    - taxon_prod_vw
    - tigr_role
    - tigrfam
    range: datetime
    required: false