Class: ImgnrTaxons062123

URI: img_core_v400:ImgnrTaxons062123

classDiagram class ImgnrTaxons062123 click ImgnrTaxons062123 href "../ImgnrTaxons062123/" ImgnrTaxons062123 : domain ImgnrTaxons062123 : family ImgnrTaxons062123 : genus ImgnrTaxons062123 : ir_class ImgnrTaxons062123 : ir_order ImgnrTaxons062123 : phylum ImgnrTaxons062123 : species ImgnrTaxons062123 : taxon_display_name ImgnrTaxons062123 : taxon_oid

Slots

Name	Cardinality and Range	Inheritance
taxon_oid	0..1 Integer	direct
domain	0..1 String	direct
phylum	0..1 String	direct
ir_class	0..1 String	direct
ir_order	0..1 String	direct
family	0..1 String	direct
genus	0..1 String	direct
species	0..1 String	direct
taxon_display_name	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:ImgnrTaxons062123
native	img_core_v400:ImgnrTaxons062123

LinkML Source

Direct

name: imgnr_taxons_062123
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - asv5_taxons
    - bcg_taxons
    - dt_all_phylo_taxon_stats
    - dt_cog_stats
    - dt_kog_stats
    - dt_phylo_taxon_stats
    - dt_phylodist_new_taxons
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - dt_scog_genes
    - dt_taxon_kmodule_mcr
    - img_iuig_tarballs_11202023
    - img_umag_bin_tarballs_02062024
    - imgnr_taxons_062123
    - iso_plasmids
    - kp_actino
    - kp_taxons
    - new_taxons
    - new_taxons_batch
    - old_taxons
    - tarball_refresh_taxons
    - taxon
    - taxon_assembly_stats
    - taxon_cathfunfam_count
    - taxon_cog_count
    - taxon_crispr_details
    - taxon_crispr_summary
    - taxon_dw
    - taxon_ec_count
    - taxon_ext_links
    - taxon_gene_prefix
    - taxon_gtdbtk_lineage
    - taxon_ko_count
    - taxon_pfam_count
    - taxon_prod_vw
    - taxon_replacements
    - taxon_replacements_view
    - taxon_scaf_prefix
    - taxon_smart_count
    - taxon_smc_stats
    - taxon_stats
    - taxon_stats_merfs
    - taxon_stats_prod_vw
    - taxon_supfam_count
    - taxon_taxon_scaffold_info
    - taxon_tigr_count
    - vw_gold_taxon
    - vw_taxon_sc
    range: integer
    required: false
  domain:
    name: domain
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - imgnr_taxons_062123
    - smart
    - taxon
    - taxon_prod_vw
    - vw_taxon_sc
    range: string
    required: false
  phylum:
    name: phylum
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - imgnr_taxons_062123
    - taxon
    - taxon_prod_vw
    range: string
    required: false
  ir_class:
    name: ir_class
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - imgnr_taxons_062123
    - taxon
    - taxon_prod_vw
    range: string
    required: false
  ir_order:
    name: ir_order
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - imgnr_taxons_062123
    - taxon
    - taxon_prod_vw
    range: string
    required: false
  family:
    name: family
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - compound
    - imgnr_taxons_062123
    - taxon
    - taxon_prod_vw
    range: string
    required: false
  genus:
    name: genus
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - imgnr_taxons_062123
    - taxon
    - taxon_prod_vw
    - vw_gold_taxon
    range: string
    required: false
  species:
    name: species
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - imgnr_taxons_062123
    - taxon
    - taxon_prod_vw
    - vw_gold_taxon
    range: string
    required: false
  taxon_display_name:
    name: taxon_display_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - imgnr_taxons_062123
    - taxon
    - taxon_prod_vw
    - vw_gold_taxon
    - vw_taxon_sc
    range: string
    required: false

Induced

name: imgnr_taxons_062123
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: taxon_oid
    owner: imgnr_taxons_062123
    domain_of:
    - asv5_taxons
    - bcg_taxons
    - dt_all_phylo_taxon_stats
    - dt_cog_stats
    - dt_kog_stats
    - dt_phylo_taxon_stats
    - dt_phylodist_new_taxons
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - dt_scog_genes
    - dt_taxon_kmodule_mcr
    - img_iuig_tarballs_11202023
    - img_umag_bin_tarballs_02062024
    - imgnr_taxons_062123
    - iso_plasmids
    - kp_actino
    - kp_taxons
    - new_taxons
    - new_taxons_batch
    - old_taxons
    - tarball_refresh_taxons
    - taxon
    - taxon_assembly_stats
    - taxon_cathfunfam_count
    - taxon_cog_count
    - taxon_crispr_details
    - taxon_crispr_summary
    - taxon_dw
    - taxon_ec_count
    - taxon_ext_links
    - taxon_gene_prefix
    - taxon_gtdbtk_lineage
    - taxon_ko_count
    - taxon_pfam_count
    - taxon_prod_vw
    - taxon_replacements
    - taxon_replacements_view
    - taxon_scaf_prefix
    - taxon_smart_count
    - taxon_smc_stats
    - taxon_stats
    - taxon_stats_merfs
    - taxon_stats_prod_vw
    - taxon_supfam_count
    - taxon_taxon_scaffold_info
    - taxon_tigr_count
    - vw_gold_taxon
    - vw_taxon_sc
    range: integer
    required: false
  domain:
    name: domain
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: domain
    owner: imgnr_taxons_062123
    domain_of:
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - imgnr_taxons_062123
    - smart
    - taxon
    - taxon_prod_vw
    - vw_taxon_sc
    range: string
    required: false
  phylum:
    name: phylum
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: phylum
    owner: imgnr_taxons_062123
    domain_of:
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - imgnr_taxons_062123
    - taxon
    - taxon_prod_vw
    range: string
    required: false
  ir_class:
    name: ir_class
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: ir_class
    owner: imgnr_taxons_062123
    domain_of:
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - imgnr_taxons_062123
    - taxon
    - taxon_prod_vw
    range: string
    required: false
  ir_order:
    name: ir_order
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: ir_order
    owner: imgnr_taxons_062123
    domain_of:
    - imgnr_taxons_062123
    - taxon
    - taxon_prod_vw
    range: string
    required: false
  family:
    name: family
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: family
    owner: imgnr_taxons_062123
    domain_of:
    - compound
    - imgnr_taxons_062123
    - taxon
    - taxon_prod_vw
    range: string
    required: false
  genus:
    name: genus
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: genus
    owner: imgnr_taxons_062123
    domain_of:
    - imgnr_taxons_062123
    - taxon
    - taxon_prod_vw
    - vw_gold_taxon
    range: string
    required: false
  species:
    name: species
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: species
    owner: imgnr_taxons_062123
    domain_of:
    - imgnr_taxons_062123
    - taxon
    - taxon_prod_vw
    - vw_gold_taxon
    range: string
    required: false
  taxon_display_name:
    name: taxon_display_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: taxon_display_name
    owner: imgnr_taxons_062123
    domain_of:
    - imgnr_taxons_062123
    - taxon
    - taxon_prod_vw
    - vw_gold_taxon
    - vw_taxon_sc
    range: string
    required: false