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Class: IsoPlasmids

URI: img_core_v400:IsoPlasmids

classDiagram class IsoPlasmids click IsoPlasmids href "../IsoPlasmids/" IsoPlasmids : plasmid_id IsoPlasmids : scaffold IsoPlasmids : source IsoPlasmids : taxon_oid

Slots

Name Cardinality and Range Description Inheritance
plasmid_id 0..1
String		 direct
taxon_oid 0..1
Integer		 direct
scaffold 0..1
String		 direct
source 0..1
String		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type Mapped Value
self img_core_v400:IsoPlasmids
native img_core_v400:IsoPlasmids

LinkML Source

Direct

name: iso_plasmids
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  plasmid_id:
    name: plasmid_id
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - iso_plasmids
    range: string
    required: false
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - asv5_taxons
    - bcg_taxons
    - dt_all_phylo_taxon_stats
    - dt_cog_stats
    - dt_kog_stats
    - dt_phylo_taxon_stats
    - dt_phylodist_new_taxons
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - dt_scog_genes
    - dt_taxon_kmodule_mcr
    - img_iuig_tarballs_11202023
    - img_umag_bin_tarballs_02062024
    - imgnr_taxons_062123
    - iso_plasmids
    - kp_actino
    - kp_taxons
    - new_taxons
    - new_taxons_batch
    - old_taxons
    - tarball_refresh_taxons
    - taxon
    - taxon_assembly_stats
    - taxon_cathfunfam_count
    - taxon_cog_count
    - taxon_crispr_details
    - taxon_crispr_summary
    - taxon_dw
    - taxon_ec_count
    - taxon_ext_links
    - taxon_gene_prefix
    - taxon_gtdbtk_lineage
    - taxon_ko_count
    - taxon_pfam_count
    - taxon_prod_vw
    - taxon_replacements
    - taxon_replacements_view
    - taxon_scaf_prefix
    - taxon_smart_count
    - taxon_smc_stats
    - taxon_stats
    - taxon_stats_merfs
    - taxon_stats_prod_vw
    - taxon_supfam_count
    - taxon_taxon_scaffold_info
    - taxon_tigr_count
    - vw_gold_taxon
    - vw_taxon_sc
    range: integer
    required: false
  scaffold:
    name: scaffold
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - iso_plasmids
    - kp_pseudo
    range: string
    required: false
  source:
    name: source
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - iso_plasmids
    - kegg_gene_ncbi_gene_ids
    - kegg_gene_uniprot_ids
    range: string
    required: false

Induced

name: iso_plasmids
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  plasmid_id:
    name: plasmid_id
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: plasmid_id
    owner: iso_plasmids
    domain_of:
    - iso_plasmids
    range: string
    required: false
  taxon_oid:
    name: taxon_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: taxon_oid
    owner: iso_plasmids
    domain_of:
    - asv5_taxons
    - bcg_taxons
    - dt_all_phylo_taxon_stats
    - dt_cog_stats
    - dt_kog_stats
    - dt_phylo_taxon_stats
    - dt_phylodist_new_taxons
    - dt_phylum_dist_genes
    - dt_phylum_dist_stats
    - dt_scog_genes
    - dt_taxon_kmodule_mcr
    - img_iuig_tarballs_11202023
    - img_umag_bin_tarballs_02062024
    - imgnr_taxons_062123
    - iso_plasmids
    - kp_actino
    - kp_taxons
    - new_taxons
    - new_taxons_batch
    - old_taxons
    - tarball_refresh_taxons
    - taxon
    - taxon_assembly_stats
    - taxon_cathfunfam_count
    - taxon_cog_count
    - taxon_crispr_details
    - taxon_crispr_summary
    - taxon_dw
    - taxon_ec_count
    - taxon_ext_links
    - taxon_gene_prefix
    - taxon_gtdbtk_lineage
    - taxon_ko_count
    - taxon_pfam_count
    - taxon_prod_vw
    - taxon_replacements
    - taxon_replacements_view
    - taxon_scaf_prefix
    - taxon_smart_count
    - taxon_smc_stats
    - taxon_stats
    - taxon_stats_merfs
    - taxon_stats_prod_vw
    - taxon_supfam_count
    - taxon_taxon_scaffold_info
    - taxon_tigr_count
    - vw_gold_taxon
    - vw_taxon_sc
    range: integer
    required: false
  scaffold:
    name: scaffold
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: scaffold
    owner: iso_plasmids
    domain_of:
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - iso_plasmids
    - kp_pseudo
    range: string
    required: false
  source:
    name: source
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: source
    owner: iso_plasmids
    domain_of:
    - iso_plasmids
    - kegg_gene_ncbi_gene_ids
    - kegg_gene_uniprot_ids
    range: string
    required: false