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Class: KeggPathway

URI: img_core_v400:KeggPathway

classDiagram class KeggPathway click KeggPathway href "../KeggPathway/" KeggPathway : add_date KeggPathway : category KeggPathway : db_source KeggPathway --> "0..1" DbSource : db_source click DbSource href "../DbSource/" KeggPathway : description KeggPathway : image_file KeggPathway : image_id KeggPathway : kegg_id KeggPathway : ko_pathway_id KeggPathway : pathway_name KeggPathway : pathway_oid KeggPathway : title

Slots

Name Cardinality and Range Description Inheritance
pathway_oid 0..1
Integer		 direct
pathway_name 0..1
String		 direct
title 0..1
String		 direct
description 0..1
String		 direct
category 0..1
String		 direct
db_source 0..1
DbSource		 Foreign key to db_source direct
image_id 0..1
String		 direct
kegg_id 0..1
String		 direct
image_file 0..1
String		 direct
add_date 0..1
Datetime		 direct
ko_pathway_id 0..1
String		 direct

Usages

used by used in type used
ImageRoi pathway range KeggPathway
ImageRoi related_pathway range KeggPathway
KeggModule pathway range KeggPathway
KeggPathwayModules pathway_oid range KeggPathway
KeggPathwayRelatedPathways pathway_oid range KeggPathway
KeggPathwayRelatedPathways related_pathways range KeggPathway

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type Mapped Value
self img_core_v400:KeggPathway
native img_core_v400:KeggPathway

LinkML Source

Direct

name: kegg_pathway
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  pathway_oid:
    name: pathway_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - kegg_pathway
    - kegg_pathway_modules
    - kegg_pathway_related_pathways
    - ko_term_pathways
    range: integer
    required: false
  pathway_name:
    name: pathway_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - kegg_pathway
    range: string
    required: false
  title:
    name: title
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - kegg_pathway
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - cath_funfam
    - cog
    - gene
    - gene_xref_families
    - genome_property
    - kegg_pathway
    - kog
    - pfam_clan
    - pfam_family
    - smart
    - superfamily
    - yesnocv
    range: string
    required: false
  category:
    name: category
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - kegg_pathway
    range: string
    required: false
  db_source:
    name: db_source
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_comp
    - cog
    - compound
    - go_term
    - kegg_pathway
    - kog
    - pfam_family
    - scaffold
    range: db_source
    required: false
  image_id:
    name: image_id
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - kegg_module
    - kegg_pathway
    - ko2pathway
    - ko_term_pathways
    range: string
    required: false
  kegg_id:
    name: kegg_id
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - kegg_pathway
    range: string
    required: false
  image_file:
    name: image_file
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - kegg_pathway
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - bcg_taxons
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - gene
    - gene_biocyc_rxns
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - paralog_group
    - pfam_clan
    - pfam_family
    - positional_cluster
    - property_step
    - reaction
    - scaffold
    - taxon
    - taxon_prod_vw
    - tigr_role
    - tigrfam
    range: datetime
    required: false
  ko_pathway_id:
    name: ko_pathway_id
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - kegg_module
    - kegg_pathway
    - ko_term_classes
    range: string
    required: false

Induced

name: kegg_pathway
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  pathway_oid:
    name: pathway_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: pathway_oid
    owner: kegg_pathway
    domain_of:
    - kegg_pathway
    - kegg_pathway_modules
    - kegg_pathway_related_pathways
    - ko_term_pathways
    range: integer
    required: false
  pathway_name:
    name: pathway_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: pathway_name
    owner: kegg_pathway
    domain_of:
    - kegg_pathway
    range: string
    required: false
  title:
    name: title
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: title
    owner: kegg_pathway
    domain_of:
    - kegg_pathway
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: description
    owner: kegg_pathway
    domain_of:
    - alt_transcript
    - cath_funfam
    - cog
    - gene
    - gene_xref_families
    - genome_property
    - kegg_pathway
    - kog
    - pfam_clan
    - pfam_family
    - smart
    - superfamily
    - yesnocv
    range: string
    required: false
  category:
    name: category
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: category
    owner: kegg_pathway
    domain_of:
    - kegg_pathway
    range: string
    required: false
  db_source:
    name: db_source
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: db_source
    owner: kegg_pathway
    domain_of:
    - biocyc_comp
    - cog
    - compound
    - go_term
    - kegg_pathway
    - kog
    - pfam_family
    - scaffold
    range: db_source
    required: false
  image_id:
    name: image_id
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: image_id
    owner: kegg_pathway
    domain_of:
    - kegg_module
    - kegg_pathway
    - ko2pathway
    - ko_term_pathways
    range: string
    required: false
  kegg_id:
    name: kegg_id
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: kegg_id
    owner: kegg_pathway
    domain_of:
    - kegg_pathway
    range: string
    required: false
  image_file:
    name: image_file
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: image_file
    owner: kegg_pathway
    domain_of:
    - kegg_pathway
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: add_date
    owner: kegg_pathway
    domain_of:
    - bcg_taxons
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - gene
    - gene_biocyc_rxns
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - paralog_group
    - pfam_clan
    - pfam_family
    - positional_cluster
    - property_step
    - reaction
    - scaffold
    - taxon
    - taxon_prod_vw
    - tigr_role
    - tigrfam
    range: datetime
    required: false
  ko_pathway_id:
    name: ko_pathway_id
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: ko_pathway_id
    owner: kegg_pathway
    domain_of:
    - kegg_module
    - kegg_pathway
    - ko_term_classes
    range: string
    required: false