Class: KoTerm

URI: img_core_v400:KoTerm

classDiagram class KoTerm click KoTerm href "../KoTerm/" KoTerm : add_date KoTerm : definition KoTerm : ko_id KoTerm : ko_name

Slots

Name	Cardinality and Range	Inheritance
ko_id	0..1 String	direct
ko_name	0..1 String	direct
definition	0..1 String	direct
add_date	0..1 Datetime	direct

Usages

used by	used in	type	used
ImageRoiKoTerms	ko_terms	range	KoTerm
KeggGeneKoTerms	KoTerm	range	KoTerm
KeggModuleKoTerms	ko_terms	range	KoTerm
KoTermClasses	ko_id	range	KoTerm
KoTermCogs	ko_id	range	KoTerm
KoTermEnzymes	ko_id	range	KoTerm
KoTermGoIds	ko_id	range	KoTerm
KoTermReactions	ko_id	range	KoTerm

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:KoTerm
native	img_core_v400:KoTerm

LinkML Source

Direct

name: ko_term
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  ko_id:
    name: ko_id
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_ko
    - dt_ko_ec_cog_pfam
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - ko2cog
    - ko2ec
    - ko2go
    - ko2module
    - ko2pathway
    - ko2reaction
    - ko2tc
    - ko_term
    - ko_term_classes
    - ko_term_cogs
    - ko_term_enzymes
    - ko_term_go_ids
    - ko_term_modules
    - ko_term_pathways
    - ko_term_reactions
    - ko_term_tc_families
    range: string
    required: false
  ko_name:
    name: ko_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - ko_term
    range: string
    required: false
  definition:
    name: definition
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - cog_function
    - go_term
    - img_orf_type
    - kegg_module
    - ko_term
    - kog_function
    - smart
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - bcg_taxons
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - gene
    - gene_biocyc_rxns
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - paralog_group
    - pfam_clan
    - pfam_family
    - positional_cluster
    - property_step
    - reaction
    - scaffold
    - taxon
    - taxon_prod_vw
    - tigr_role
    - tigrfam
    range: datetime
    required: false

Induced

name: ko_term
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  ko_id:
    name: ko_id
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: ko_id
    owner: ko_term
    domain_of:
    - dt_ko
    - dt_ko_ec_cog_pfam
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - ko2cog
    - ko2ec
    - ko2go
    - ko2module
    - ko2pathway
    - ko2reaction
    - ko2tc
    - ko_term
    - ko_term_classes
    - ko_term_cogs
    - ko_term_enzymes
    - ko_term_go_ids
    - ko_term_modules
    - ko_term_pathways
    - ko_term_reactions
    - ko_term_tc_families
    range: string
    required: false
  ko_name:
    name: ko_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: ko_name
    owner: ko_term
    domain_of:
    - ko_term
    range: string
    required: false
  definition:
    name: definition
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: definition
    owner: ko_term
    domain_of:
    - cog_function
    - go_term
    - img_orf_type
    - kegg_module
    - ko_term
    - kog_function
    - smart
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: add_date
    owner: ko_term
    domain_of:
    - bcg_taxons
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - gene
    - gene_biocyc_rxns
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - paralog_group
    - pfam_clan
    - pfam_family
    - positional_cluster
    - property_step
    - reaction
    - scaffold
    - taxon
    - taxon_prod_vw
    - tigr_role
    - tigrfam
    range: datetime
    required: false