Class: KpPseudo

URI: img_core_v400:KpPseudo

classDiagram class KpPseudo click KpPseudo href "../KpPseudo/" KpPseudo : aa_seq_length KpPseudo : end_coord KpPseudo : gene_display_name KpPseudo : gene_oid KpPseudo : locus_tag KpPseudo : product_name KpPseudo : scaffold KpPseudo : start_coord KpPseudo : strand KpPseudo : taxon

Slots

Name	Cardinality and Range	Inheritance
gene_oid	0..1 Integer	direct
taxon	0..1 Integer	direct
scaffold	0..1 Integer	direct
start_coord	0..1 Integer	direct
end_coord	0..1 Integer	direct
strand	0..1 String	direct
locus_tag	0..1 String	direct
aa_seq_length	0..1 Integer	direct
product_name	0..1 String	direct
gene_display_name	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:KpPseudo
native	img_core_v400:KpPseudo

LinkML Source

Direct

name: kp_pseudo
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - cog_species
    - dt_img_gene_prot_pep_sample
    - dt_taxon_node_lite
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - paralog_group
    - scaffold
    - scaffold_stats
    - taxon_node_lite
    range: integer
    required: false
  scaffold:
    name: scaffold
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - iso_plasmids
    - kp_pseudo
    range: integer
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - dt_intergenic
    - gene
    - gene_frag_coords
    - gene_sig_peptides
    - kp_pseudo
    - scaffold_nx_feature
    - scaffold_repeats
    - taxon_crispr_summary
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - dt_intergenic
    - gene
    - gene_frag_coords
    - gene_sig_peptides
    - kp_pseudo
    - scaffold_nx_feature
    - scaffold_repeats
    - taxon_crispr_summary
    range: integer
    required: false
  strand:
    name: strand
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - gene
    - kp_pseudo
    - scaffold_nx_feature
    range: string
    required: false
  locus_tag:
    name: locus_tag
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - gene
    - kp_pseudo
    - merfs_gene_mapping
    range: string
    required: false
  aa_seq_length:
    name: aa_seq_length
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - gene
    - kegg_gene
    - kp_pseudo
    range: integer
    required: false
  product_name:
    name: product_name
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - gene
    - kp_pseudo
    range: string
    required: false
  gene_display_name:
    name: gene_display_name
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - dt_img_gene_prot_pep_sample
    - gene
    - kp_pseudo
    range: string
    required: false

Induced

name: kp_pseudo
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: gene_oid
    owner: kp_pseudo
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: taxon
    owner: kp_pseudo
    domain_of:
    - cog_species
    - dt_img_gene_prot_pep_sample
    - dt_taxon_node_lite
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - paralog_group
    - scaffold
    - scaffold_stats
    - taxon_node_lite
    range: integer
    required: false
  scaffold:
    name: scaffold
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: scaffold
    owner: kp_pseudo
    domain_of:
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - iso_plasmids
    - kp_pseudo
    range: integer
    required: false
  start_coord:
    name: start_coord
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: start_coord
    owner: kp_pseudo
    domain_of:
    - alt_transcript
    - dt_intergenic
    - gene
    - gene_frag_coords
    - gene_sig_peptides
    - kp_pseudo
    - scaffold_nx_feature
    - scaffold_repeats
    - taxon_crispr_summary
    range: integer
    required: false
  end_coord:
    name: end_coord
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: end_coord
    owner: kp_pseudo
    domain_of:
    - alt_transcript
    - dt_intergenic
    - gene
    - gene_frag_coords
    - gene_sig_peptides
    - kp_pseudo
    - scaffold_nx_feature
    - scaffold_repeats
    - taxon_crispr_summary
    range: integer
    required: false
  strand:
    name: strand
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: strand
    owner: kp_pseudo
    domain_of:
    - alt_transcript
    - gene
    - kp_pseudo
    - scaffold_nx_feature
    range: string
    required: false
  locus_tag:
    name: locus_tag
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: locus_tag
    owner: kp_pseudo
    domain_of:
    - gene
    - kp_pseudo
    - merfs_gene_mapping
    range: string
    required: false
  aa_seq_length:
    name: aa_seq_length
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: aa_seq_length
    owner: kp_pseudo
    domain_of:
    - alt_transcript
    - gene
    - kegg_gene
    - kp_pseudo
    range: integer
    required: false
  product_name:
    name: product_name
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: product_name
    owner: kp_pseudo
    domain_of:
    - gene
    - kp_pseudo
    range: string
    required: false
  gene_display_name:
    name: gene_display_name
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: gene_display_name
    owner: kp_pseudo
    domain_of:
    - dt_img_gene_prot_pep_sample
    - gene
    - kp_pseudo
    range: string
    required: false