Class: MerfsGeneMapping

URI: img_core_v400:MerfsGeneMapping

classDiagram class MerfsGeneMapping click MerfsGeneMapping href "../MerfsGeneMapping/" MerfsGeneMapping : gene_oid MerfsGeneMapping : locus_tag MerfsGeneMapping : merfs_gene_id MerfsGeneMapping : taxon

Slots

Name	Cardinality and Range	Inheritance
gene_oid	0..1 Integer	direct
merfs_gene_id	0..1 String	direct
locus_tag	0..1 String	direct
taxon	0..1 Integer	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:MerfsGeneMapping
native	img_core_v400:MerfsGeneMapping

LinkML Source

Direct

name: merfs_gene_mapping
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  merfs_gene_id:
    name: merfs_gene_id
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - merfs_gene_mapping
    range: string
    required: false
  locus_tag:
    name: locus_tag
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - gene
    - kp_pseudo
    - merfs_gene_mapping
    range: string
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - cog_species
    - dt_img_gene_prot_pep_sample
    - dt_taxon_node_lite
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - paralog_group
    - scaffold
    - scaffold_stats
    - taxon_node_lite
    range: integer
    required: false

Induced

name: merfs_gene_mapping
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  gene_oid:
    name: gene_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: gene_oid
    owner: merfs_gene_mapping
    domain_of:
    - actino_abc_genes
    - delete_genes
    - dt_ht_hits
    - dt_img_gene_prot_pep_sample
    - dt_phylum_dist_genes
    - dt_scog_genes
    - gene
    - gene_aliases
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_essential_genes
    - gene_exceptions
    - gene_ext_links
    - gene_feature_tags
    - gene_frag_coords
    - gene_go_terms
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_notes
    - gene_paralogs
    - gene_pdb_xrefs
    - gene_pfam_families
    - gene_sig_peptides
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - mv_gene_tmhmm_stats
    - tmp_genes
    range: integer
    required: false
  merfs_gene_id:
    name: merfs_gene_id
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: merfs_gene_id
    owner: merfs_gene_mapping
    domain_of:
    - merfs_gene_mapping
    range: string
    required: false
  locus_tag:
    name: locus_tag
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: locus_tag
    owner: merfs_gene_mapping
    domain_of:
    - gene
    - kp_pseudo
    - merfs_gene_mapping
    range: string
    required: false
  taxon:
    name: taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: taxon
    owner: merfs_gene_mapping
    domain_of:
    - cog_species
    - dt_img_gene_prot_pep_sample
    - dt_taxon_node_lite
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - paralog_group
    - scaffold
    - scaffold_stats
    - taxon_node_lite
    range: integer
    required: false