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Class: ParalogGroup

URI: img_core_v400:ParalogGroup

classDiagram class ParalogGroup click ParalogGroup href "../ParalogGroup/" ParalogGroup : add_date ParalogGroup : group_name ParalogGroup : group_oid ParalogGroup : taxon ParalogGroup --> "0..1" Taxon : taxon click Taxon href "../Taxon/"

Slots

Name Cardinality and Range Description Inheritance
group_oid 0..1
Integer		 direct
taxon 0..1
Taxon		 Foreign key to taxon direct
add_date 0..1
Datetime		 direct
group_name 0..1
String		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type Mapped Value
self img_core_v400:ParalogGroup
native img_core_v400:ParalogGroup

LinkML Source

Direct

name: paralog_group
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  group_oid:
    name: group_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - actino_cassette
    - actino_cassette_genes
    - paralog_group
    - paralog_group_genes
    - positional_cluster
    - positional_cluster_genes
    range: integer
    required: false
  taxon:
    name: taxon
    description: Foreign key to taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - cog_species
    - dt_img_gene_prot_pep_sample
    - dt_taxon_node_lite
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - paralog_group
    - scaffold
    - scaffold_stats
    - taxon_node_lite
    range: taxon
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - bcg_taxons
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - gene
    - gene_biocyc_rxns
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - paralog_group
    - pfam_clan
    - pfam_family
    - positional_cluster
    - property_step
    - reaction
    - scaffold
    - taxon
    - taxon_prod_vw
    - tigr_role
    - tigrfam
    range: datetime
    required: false
  group_name:
    name: group_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - paralog_group
    range: string
    required: false

Induced

name: paralog_group
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  group_oid:
    name: group_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: group_oid
    owner: paralog_group
    domain_of:
    - actino_cassette
    - actino_cassette_genes
    - paralog_group
    - paralog_group_genes
    - positional_cluster
    - positional_cluster_genes
    range: integer
    required: false
  taxon:
    name: taxon
    description: Foreign key to taxon
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: taxon
    owner: paralog_group
    domain_of:
    - cog_species
    - dt_img_gene_prot_pep_sample
    - dt_taxon_node_lite
    - gene
    - gene_biocyc_rxns
    - gene_cathfam
    - gene_cog_groups
    - gene_img_interpro_hits
    - gene_ko_enzymes
    - gene_ko_enzymes_new
    - gene_ko_terms
    - gene_kog_groups
    - gene_pfam_families
    - gene_smart
    - gene_superfam
    - gene_tigrfams
    - gene_xref_families
    - kp_pseudo
    - merfs_gene_mapping
    - paralog_group
    - scaffold
    - scaffold_stats
    - taxon_node_lite
    range: taxon
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: add_date
    owner: paralog_group
    domain_of:
    - bcg_taxons
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - gene
    - gene_biocyc_rxns
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - paralog_group
    - pfam_clan
    - pfam_family
    - positional_cluster
    - property_step
    - reaction
    - scaffold
    - taxon
    - taxon_prod_vw
    - tigr_role
    - tigrfam
    range: datetime
    required: false
  group_name:
    name: group_name
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: group_name
    owner: paralog_group
    domain_of:
    - paralog_group
    range: string
    required: false