Class: PfamClan
classDiagram
class PfamClan
click PfamClan href "../PfamClan/"
PfamClan : add_date
PfamClan : comments
PfamClan : description
PfamClan : ext_accession
PfamClan : name
PfamClan : previous_name
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| ext_accession | 0..1 String |
direct | |
| name | 0..1 String |
direct | |
| description | 0..1 String |
direct | |
| comments | 0..1 String |
direct | |
| add_date | 0..1 Datetime |
direct | |
| previous_name | 0..1 String |
direct |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/jgi/img_core_v400
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | img_core_v400:PfamClan |
| native | img_core_v400:PfamClan |
LinkML Source
Direct
name: pfam_clan
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
ext_accession:
name: ext_accession
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- alt_transcript
- compound
- compound_aliases
- compound_ext_links
- gene_tigrfams
- interpro
- interpro_go_terms
- pfam_clan
- pfam_clan_pfam_families
- pfam_family
- pfam_family_cogs
- pfam_family_ext_links
- pfam_family_genome_properties
- reaction
- reaction_compounds
- reaction_enzymes
- reaction_ext_links
- scaffold
- tigrfam
- tigrfam_enzymes
- tigrfam_genome_properties
- tigrfam_roles
range: string
required: false
name:
name: name
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- alt_transcript
- cog2014
- cogfunc2014
- db_source
- dt_cog
- dt_img_term
- dt_ko
- dt_pfam
- dt_tfam
- exclude_func
- genome_property
- interpro
- pfam_clan
- pfam_dead
- pfam_family
- property_step
- superfamily
range: string
required: false
description:
name: description
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- alt_transcript
- cath_funfam
- cog
- gene
- gene_xref_families
- genome_property
- kegg_pathway
- kog
- pfam_clan
- pfam_family
- smart
- superfamily
- yesnocv
range: string
required: false
comments:
name: comments
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- biocyc_class
- biocyc_comp
- biocyc_enzrxn
- biocyc_pathway_comments
- biocyc_protein
- biocyc_reaction
- enzyme
- enzyme_transferred
- gene_sig_peptides
- go_term
- pfam_clan
- pfam_dead
- pfam_family
- reaction
- taxon
- taxon_prod_vw
- taxon_replacements
range: string
required: false
add_date:
name: add_date
from_schema: https://w3id.org/jgi/img_core_v400
domain_of:
- bcg_taxons
- cog
- cog_function
- cog_species
- compound
- enzyme
- enzyme_transferred
- gene
- gene_biocyc_rxns
- genome_property
- go_graph_path
- go_term
- image_roi
- kegg_pathway
- km_image_roi
- ko_term
- kog
- kog_function
- paralog_group
- pfam_clan
- pfam_family
- positional_cluster
- property_step
- reaction
- scaffold
- taxon
- taxon_prod_vw
- tigr_role
- tigrfam
range: datetime
required: false
previous_name:
name: previous_name
from_schema: https://w3id.org/jgi/img_core_v400
rank: 1000
domain_of:
- pfam_clan
- pfam_family
range: string
required: false
Induced
name: pfam_clan
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
ext_accession:
name: ext_accession
from_schema: https://w3id.org/jgi/img_core_v400
alias: ext_accession
owner: pfam_clan
domain_of:
- alt_transcript
- compound
- compound_aliases
- compound_ext_links
- gene_tigrfams
- interpro
- interpro_go_terms
- pfam_clan
- pfam_clan_pfam_families
- pfam_family
- pfam_family_cogs
- pfam_family_ext_links
- pfam_family_genome_properties
- reaction
- reaction_compounds
- reaction_enzymes
- reaction_ext_links
- scaffold
- tigrfam
- tigrfam_enzymes
- tigrfam_genome_properties
- tigrfam_roles
range: string
required: false
name:
name: name
from_schema: https://w3id.org/jgi/img_core_v400
alias: name
owner: pfam_clan
domain_of:
- alt_transcript
- cog2014
- cogfunc2014
- db_source
- dt_cog
- dt_img_term
- dt_ko
- dt_pfam
- dt_tfam
- exclude_func
- genome_property
- interpro
- pfam_clan
- pfam_dead
- pfam_family
- property_step
- superfamily
range: string
required: false
description:
name: description
from_schema: https://w3id.org/jgi/img_core_v400
alias: description
owner: pfam_clan
domain_of:
- alt_transcript
- cath_funfam
- cog
- gene
- gene_xref_families
- genome_property
- kegg_pathway
- kog
- pfam_clan
- pfam_family
- smart
- superfamily
- yesnocv
range: string
required: false
comments:
name: comments
from_schema: https://w3id.org/jgi/img_core_v400
alias: comments
owner: pfam_clan
domain_of:
- biocyc_class
- biocyc_comp
- biocyc_enzrxn
- biocyc_pathway_comments
- biocyc_protein
- biocyc_reaction
- enzyme
- enzyme_transferred
- gene_sig_peptides
- go_term
- pfam_clan
- pfam_dead
- pfam_family
- reaction
- taxon
- taxon_prod_vw
- taxon_replacements
range: string
required: false
add_date:
name: add_date
from_schema: https://w3id.org/jgi/img_core_v400
alias: add_date
owner: pfam_clan
domain_of:
- bcg_taxons
- cog
- cog_function
- cog_species
- compound
- enzyme
- enzyme_transferred
- gene
- gene_biocyc_rxns
- genome_property
- go_graph_path
- go_term
- image_roi
- kegg_pathway
- km_image_roi
- ko_term
- kog
- kog_function
- paralog_group
- pfam_clan
- pfam_family
- positional_cluster
- property_step
- reaction
- scaffold
- taxon
- taxon_prod_vw
- tigr_role
- tigrfam
range: datetime
required: false
previous_name:
name: previous_name
from_schema: https://w3id.org/jgi/img_core_v400
rank: 1000
alias: previous_name
owner: pfam_clan
domain_of:
- pfam_clan
- pfam_family
range: string
required: false