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Class: PfamClanPfamFamilies

URI: img_core_v400:PfamClanPfamFamilies

classDiagram class PfamClanPfamFamilies click PfamClanPfamFamilies href "../PfamClanPfamFamilies/" PfamClanPfamFamilies : ext_accession PfamClanPfamFamilies : pfam_families

Slots

Name Cardinality and Range Description Inheritance
ext_accession 0..1
String		 direct
pfam_families 0..1
String		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type Mapped Value
self img_core_v400:PfamClanPfamFamilies
native img_core_v400:PfamClanPfamFamilies

LinkML Source

Direct

name: pfam_clan_pfam_families
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - compound
    - compound_aliases
    - compound_ext_links
    - gene_tigrfams
    - interpro
    - interpro_go_terms
    - pfam_clan
    - pfam_clan_pfam_families
    - pfam_family
    - pfam_family_cogs
    - pfam_family_ext_links
    - pfam_family_genome_properties
    - reaction
    - reaction_compounds
    - reaction_enzymes
    - reaction_ext_links
    - scaffold
    - tigrfam
    - tigrfam_enzymes
    - tigrfam_genome_properties
    - tigrfam_roles
    range: string
    required: false
  pfam_families:
    name: pfam_families
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - pfam_clan_pfam_families
    range: string
    required: false

Induced

name: pfam_clan_pfam_families
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: ext_accession
    owner: pfam_clan_pfam_families
    domain_of:
    - alt_transcript
    - compound
    - compound_aliases
    - compound_ext_links
    - gene_tigrfams
    - interpro
    - interpro_go_terms
    - pfam_clan
    - pfam_clan_pfam_families
    - pfam_family
    - pfam_family_cogs
    - pfam_family_ext_links
    - pfam_family_genome_properties
    - reaction
    - reaction_compounds
    - reaction_enzymes
    - reaction_ext_links
    - scaffold
    - tigrfam
    - tigrfam_enzymes
    - tigrfam_genome_properties
    - tigrfam_roles
    range: string
    required: false
  pfam_families:
    name: pfam_families
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: pfam_families
    owner: pfam_clan_pfam_families
    domain_of:
    - pfam_clan_pfam_families
    range: string
    required: false