Class: PfamDead

URI: img_core_v400:PfamDead

classDiagram class PfamDead click PfamDead href "../PfamDead/" PfamDead : comments PfamDead : dead_pfam_id PfamDead : name PfamDead : new_pfam_id

Slots

Name	Cardinality and Range	Inheritance
dead_pfam_id	0..1 String	direct
name	0..1 String	direct
comments	0..1 String	direct
new_pfam_id	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:PfamDead
native	img_core_v400:PfamDead

LinkML Source

Direct

name: pfam_dead
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  dead_pfam_id:
    name: dead_pfam_id
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - pfam_dead
    range: string
    required: false
  name:
    name: name
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - cog2014
    - cogfunc2014
    - db_source
    - dt_cog
    - dt_img_term
    - dt_ko
    - dt_pfam
    - dt_tfam
    - exclude_func
    - genome_property
    - interpro
    - pfam_clan
    - pfam_dead
    - pfam_family
    - property_step
    - superfamily
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - gene_sig_peptides
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    - taxon
    - taxon_prod_vw
    - taxon_replacements
    range: string
    required: false
  new_pfam_id:
    name: new_pfam_id
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    domain_of:
    - pfam_dead
    range: string
    required: false

Induced

name: pfam_dead
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  dead_pfam_id:
    name: dead_pfam_id
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: dead_pfam_id
    owner: pfam_dead
    domain_of:
    - pfam_dead
    range: string
    required: false
  name:
    name: name
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: name
    owner: pfam_dead
    domain_of:
    - alt_transcript
    - cog2014
    - cogfunc2014
    - db_source
    - dt_cog
    - dt_img_term
    - dt_ko
    - dt_pfam
    - dt_tfam
    - exclude_func
    - genome_property
    - interpro
    - pfam_clan
    - pfam_dead
    - pfam_family
    - property_step
    - superfamily
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: comments
    owner: pfam_dead
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - gene_sig_peptides
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    - taxon
    - taxon_prod_vw
    - taxon_replacements
    range: string
    required: false
  new_pfam_id:
    name: new_pfam_id
    from_schema: https://w3id.org/jgi/img_core_v400
    rank: 1000
    alias: new_pfam_id
    owner: pfam_dead
    domain_of:
    - pfam_dead
    range: string
    required: false