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Class: PfamFamilyCogs

URI: img_core_v400:PfamFamilyCogs

classDiagram class PfamFamilyCogs click PfamFamilyCogs href "../PfamFamilyCogs/" PfamFamilyCogs : cog PfamFamilyCogs --> "0..1" Cog : cog click Cog href "../Cog/" PfamFamilyCogs : ext_accession PfamFamilyCogs : functions PfamFamilyCogs --> "0..1" CogFunction : functions click CogFunction href "../CogFunction/"

Slots

Name Cardinality and Range Description Inheritance
ext_accession 0..1
String		 direct
cog 0..1
Cog		 Foreign key to cog direct
functions 0..1
CogFunction		 Foreign key to cog_function direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type Mapped Value
self img_core_v400:PfamFamilyCogs
native img_core_v400:PfamFamilyCogs

LinkML Source

Direct

name: pfam_family_cogs
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - alt_transcript
    - compound
    - compound_aliases
    - compound_ext_links
    - gene_tigrfams
    - interpro
    - interpro_go_terms
    - pfam_clan
    - pfam_clan_pfam_families
    - pfam_family
    - pfam_family_cogs
    - pfam_family_ext_links
    - pfam_family_genome_properties
    - reaction
    - reaction_compounds
    - reaction_enzymes
    - reaction_ext_links
    - scaffold
    - tigrfam
    - tigrfam_enzymes
    - tigrfam_genome_properties
    - tigrfam_roles
    range: string
    required: false
  cog:
    name: cog
    description: Foreign key to cog
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - cog2014
    - dt_ko_ec_cog_pfam
    - gene_cog_groups
    - pfam_family_cogs
    range: cog
    required: false
  functions:
    name: functions
    description: Foreign key to cog_function
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - cog_functions
    - kog_functions
    - pfam_family_cogs
    range: cog_function
    required: false

Induced

name: pfam_family_cogs
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: ext_accession
    owner: pfam_family_cogs
    domain_of:
    - alt_transcript
    - compound
    - compound_aliases
    - compound_ext_links
    - gene_tigrfams
    - interpro
    - interpro_go_terms
    - pfam_clan
    - pfam_clan_pfam_families
    - pfam_family
    - pfam_family_cogs
    - pfam_family_ext_links
    - pfam_family_genome_properties
    - reaction
    - reaction_compounds
    - reaction_enzymes
    - reaction_ext_links
    - scaffold
    - tigrfam
    - tigrfam_enzymes
    - tigrfam_genome_properties
    - tigrfam_roles
    range: string
    required: false
  cog:
    name: cog
    description: Foreign key to cog
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: cog
    owner: pfam_family_cogs
    domain_of:
    - cog2014
    - dt_ko_ec_cog_pfam
    - gene_cog_groups
    - pfam_family_cogs
    range: cog
    required: false
  functions:
    name: functions
    description: Foreign key to cog_function
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: functions
    owner: pfam_family_cogs
    domain_of:
    - cog_functions
    - kog_functions
    - pfam_family_cogs
    range: cog_function
    required: false