Class: ScaffoldExtLinks

URI: img_core_v400:ScaffoldExtLinks

classDiagram class ScaffoldExtLinks click ScaffoldExtLinks href "../ScaffoldExtLinks/" ScaffoldExtLinks : custom_url ScaffoldExtLinks : db_name ScaffoldExtLinks --> "0..1" DbSource : db_name click DbSource href "../DbSource/" ScaffoldExtLinks : id ScaffoldExtLinks : scaffold_oid

Slots

Name	Cardinality and Range	Description	Inheritance
scaffold_oid	0..1 Integer		direct
db_name	0..1 DbSource	Foreign key to db_source	direct
id	0..1 String		direct
custom_url	0..1 String		direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_core_v400

Mappings

Mapping Type	Mapped Value
self	img_core_v400:ScaffoldExtLinks
native	img_core_v400:ScaffoldExtLinks

LinkML Source

Direct

name: scaffold_ext_links
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  scaffold_oid:
    name: scaffold_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - delete_scaffolds
    - dt_intergenic
    - scaffold
    - scaffold_ext_links
    - scaffold_nx_feature
    - scaffold_repeats
    - scaffold_stats
    range: integer
    required: false
  db_name:
    name: db_name
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_comp_ext_links
    - biocyc_enzrxn_ext_links
    - biocyc_pathway_ext_links
    - biocyc_protein_ext_links
    - biocyc_reaction_ext_links
    - compound_ext_links
    - enzyme_ext_links
    - gene_cathfam
    - gene_ext_links
    - gene_pdb_xrefs
    - gene_smart
    - gene_superfam
    - gene_xref_families
    - pfam_family_ext_links
    - reaction_ext_links
    - scaffold_ext_links
    - taxon_ext_links
    range: db_source
    required: false
  id:
    name: id
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - biocyc_comp_ext_links
    - biocyc_enzrxn_ext_links
    - biocyc_pathway_ext_links
    - biocyc_protein_ext_links
    - biocyc_reaction_ext_links
    - compound_ext_links
    - enzyme_ext_links
    - gene_cathfam
    - gene_ext_links
    - gene_pdb_xrefs
    - gene_smart
    - gene_superfam
    - gene_xref_families
    - pfam_family_ext_links
    - reaction_ext_links
    - scaffold_ext_links
    - taxon_ext_links
    range: string
    required: false
  custom_url:
    name: custom_url
    from_schema: https://w3id.org/jgi/img_core_v400
    domain_of:
    - gene_ext_links
    - scaffold_ext_links
    - taxon_ext_links
    range: string
    required: false

Induced

name: scaffold_ext_links
from_schema: https://w3id.org/jgi/img_core_v400
attributes:
  scaffold_oid:
    name: scaffold_oid
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: scaffold_oid
    owner: scaffold_ext_links
    domain_of:
    - delete_scaffolds
    - dt_intergenic
    - scaffold
    - scaffold_ext_links
    - scaffold_nx_feature
    - scaffold_repeats
    - scaffold_stats
    range: integer
    required: false
  db_name:
    name: db_name
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: db_name
    owner: scaffold_ext_links
    domain_of:
    - biocyc_comp_ext_links
    - biocyc_enzrxn_ext_links
    - biocyc_pathway_ext_links
    - biocyc_protein_ext_links
    - biocyc_reaction_ext_links
    - compound_ext_links
    - enzyme_ext_links
    - gene_cathfam
    - gene_ext_links
    - gene_pdb_xrefs
    - gene_smart
    - gene_superfam
    - gene_xref_families
    - pfam_family_ext_links
    - reaction_ext_links
    - scaffold_ext_links
    - taxon_ext_links
    range: db_source
    required: false
  id:
    name: id
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: id
    owner: scaffold_ext_links
    domain_of:
    - biocyc_comp_ext_links
    - biocyc_enzrxn_ext_links
    - biocyc_pathway_ext_links
    - biocyc_protein_ext_links
    - biocyc_reaction_ext_links
    - compound_ext_links
    - enzyme_ext_links
    - gene_cathfam
    - gene_ext_links
    - gene_pdb_xrefs
    - gene_smart
    - gene_superfam
    - gene_xref_families
    - pfam_family_ext_links
    - reaction_ext_links
    - scaffold_ext_links
    - taxon_ext_links
    range: string
    required: false
  custom_url:
    name: custom_url
    from_schema: https://w3id.org/jgi/img_core_v400
    alias: custom_url
    owner: scaffold_ext_links
    domain_of:
    - gene_ext_links
    - scaffold_ext_links
    - taxon_ext_links
    range: string
    required: false